Analysis of interatomic Contacts of Structural Units in PDB entry:
8C5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C5W entry

There is 1 chain in PDB entry 8C5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 47LYS 680
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8C5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 110Right-handed alpha
Helix 2
AA2
A
121 133Right-handed alpha
Helix 3
AA3
A
133 139Right-handed alpha
Helix 4
AA4
A
141 151Right-handed alpha
Helix 5
AA5
A
154 163Right-handed alpha
Helix 6
AA6
A
168 172Right-handed 310
Helix 7
AA7
A
175 188Right-handed alpha
Helix 8
AA8
A
205 214Right-handed alpha
Helix 9
AA9
A
238 243Right-handed alpha
Helix 10
AB1
A
274 280Right-handed alpha
Helix 11
AB2
A
280 285Right-handed alpha
Helix 12
AB3
A
321 341Right-handed alpha
Helix 13
AB4
A
381 386Right-handed alpha
Helix 14
AB5
A
391 393Right-handed 310
Helix 15
AB6
A
394 405Right-handed alpha
Helix 16
AB7
A
422 424Right-handed 310
Helix 17
AB8
A
429 433Right-handed 310
Helix 18
AB9
A
440 448Right-handed alpha
Helix 19
AC1
A
449 461Right-handed alpha
Helix 20
AC2
A
475 489Right-handed alpha
Helix 21
AC3
A
513 521Right-handed alpha
Helix 22
AC4
A
529 542Right-handed alpha
Helix 23
AC5
A
582 599Right-handed alpha
Helix 24
AC6
A
604 609Right-handed alpha
Helix 25
AC7
A
666 677Right-handed alpha
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There are 9 sheets in PDB entry 8C5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
61 64anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
79 91anti-parallel
Strand 3
A
222 231anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
79 91anti-parallel
Strand 3
A
72 73anti-parallel
Strand 4
A
315 318parallel
Strand 5
A
552 556anti-parallel
Strand 6
A
567 570anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
305 308anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
362 369anti-parallel
Strand 3
A
349 355anti-parallel
Strand 4
A
647 657anti-parallel
Strand 5
A
629 640anti-parallel
Strand 6
A
616 620anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
362 369anti-parallel
Strand 3
A
349 355anti-parallel
Strand 4
A
647 657anti-parallel
Strand 5
A
629 640anti-parallel
Strand 6
A
623 626anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
437 439anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
426 427anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 547first strand
Strand 2
A
575 578anti-parallel
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