Analysis of interatomic Contacts of Structural Units in PDB entry:
8C5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C5Y entry

There are 8 chains in PDB entry 8C5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 182	MET 358
B	LYS 2	MET 181
C	ARG 6	TRP 117
D	THR 184	MET 358
E	LYS 2	MET 181
F	ARG 6	TRP 117
G	THR 184	MET 358
H	LYS 2	MET 121

There are 50 helices in PDB entry 8C5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	189	193	Right-handed 310
Helix 2	AA2	A	267	275	Right-handed alpha
Helix 3	AA3	A	277	291	Right-handed alpha
Helix 4	AA4	A	294	307	Right-handed alpha
Helix 5	AA5	A	308	311	Right-handed 310
Helix 6	AA6	A	342	356	Right-handed alpha
Helix 7	AA7	B	11	18	Right-handed alpha
Helix 8	AA8	B	80	87	Right-handed 310
Helix 9	AA9	B	118	150	Right-handed alpha
Helix 10	AB1	B	153	163	Right-handed alpha
Helix 11	AB2	B	166	181	Right-handed alpha
Helix 12	AB3	C	15	19	Right-handed 310
Helix 13	AB4	C	93	114	Right-handed alpha
Helix 14	AB5	D	189	193	Right-handed 310
Helix 15	AB6	D	267	275	Right-handed alpha
Helix 16	AB7	D	277	291	Right-handed alpha
Helix 17	AB8	D	294	306	Right-handed alpha
Helix 18	AB9	D	307	311	Right-handed 310
Helix 19	AC1	D	340	356	Right-handed alpha
Helix 20	AC2	E	11	17	Right-handed alpha
Helix 21	AC3	E	81	86	Right-handed alpha
Helix 22	AC4	E	118	150	Right-handed alpha
Helix 23	AC5	E	153	164	Right-handed alpha
Helix 24	AC6	E	167	181	Right-handed alpha
Helix 25	AC7	F	93	114	Right-handed alpha
Helix 26	AC8	G	189	193	Right-handed 310
Helix 27	AC9	G	267	275	Right-handed alpha
Helix 28	AD1	G	277	291	Right-handed alpha
Helix 29	AD2	G	294	307	Right-handed alpha
Helix 30	AD3	G	308	311	Right-handed 310
Helix 31	AD4	G	340	356	Right-handed alpha
Helix 32	AD5	H	11	18	Right-handed alpha
Helix 33	AD6	H	80	87	Right-handed 310
Helix 34	AD7	H	118	150	Right-handed alpha
Helix 35	AD8	H	153	164	Right-handed alpha
Helix 36	AD9	H	166	181	Right-handed alpha
Helix 37	AE1	I	15	19	Right-handed 310
Helix 38	AE2	I	93	114	Right-handed alpha
Helix 39	AE3	J	189	193	Right-handed 310
Helix 40	AE4	J	267	275	Right-handed alpha
Helix 41	AE5	J	277	291	Right-handed alpha
Helix 42	AE6	J	294	306	Right-handed alpha
Helix 43	AE7	J	340	356	Right-handed alpha
Helix 44	AE8	K	11	17	Right-handed alpha
Helix 45	AE9	K	81	86	Right-handed alpha
Helix 46	AF1	K	118	150	Right-handed alpha
Helix 47	AF2	K	153	164	Right-handed alpha
Helix 48	AF3	K	167	181	Right-handed alpha
Helix 49	AF4	L	15	19	Right-handed 310
Helix 50	AF5	L	94	114	Right-handed alpha

There are 22 sheets in PDB entry 8C5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	200	217	parallel
Strand 3	A	314	324	anti-parallel
Strand 4	A	328	338	anti-parallel
Strand 5	A	260	266	parallel
Strand 6	A	245	255	anti-parallel
Strand 7	A	200	217	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	233	236	anti-parallel
Strand 3	A	240	241	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	42	49	parallel
Strand 3	B	61	67	anti-parallel
Strand 4	B	54	55	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	42	49	parallel
Strand 3	B	93	102	anti-parallel
Strand 4	B	107	116	anti-parallel
Strand 5	B	72	78	parallel
Strand 6	B	61	67	anti-parallel
Strand 7	B	54	55	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	21	first strand
Strand 2	B	31	33	anti-parallel
Strand 3	B	39	40	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	25	36	parallel
Strand 3	C	65	75	anti-parallel
Strand 4	C	78	88	anti-parallel
Strand 5	C	50	54	parallel
Strand 6	C	41	45	anti-parallel
Strand 7	C	25	36	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	200	217	parallel
Strand 3	D	314	324	anti-parallel
Strand 4	D	328	337	anti-parallel
Strand 5	D	260	266	parallel
Strand 6	D	245	255	anti-parallel
Strand 7	D	200	217	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	228	first strand
Strand 2	D	233	235	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	E	31	33	anti-parallel
Strand 3	E	39	40	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	61	67	anti-parallel
Strand 3	E	72	78	anti-parallel
Strand 4	E	107	116	parallel
Strand 5	E	93	102	anti-parallel
Strand 6	E	42	49	anti-parallel
Strand 7	E	61	67	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	25	36	parallel
Strand 3	F	66	74	anti-parallel
Strand 4	F	79	88	anti-parallel
Strand 5	F	50	54	parallel
Strand 6	F	41	45	anti-parallel
Strand 7	F	25	36	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	186	187	first strand
Strand 2	G	200	217	parallel
Strand 3	G	314	324	anti-parallel
Strand 4	G	328	338	anti-parallel
Strand 5	G	260	266	parallel
Strand 6	G	245	255	anti-parallel
Strand 7	G	200	217	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	228	first strand
Strand 2	G	233	235	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	9	first strand
Strand 2	H	42	49	parallel
Strand 3	H	61	67	anti-parallel
Strand 4	H	54	55	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	9	first strand
Strand 2	H	42	49	parallel
Strand 3	H	93	102	anti-parallel
Strand 4	H	107	116	anti-parallel
Strand 5	H	72	78	parallel
Strand 6	H	61	67	anti-parallel
Strand 7	H	54	55	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	21	first strand
Strand 2	H	31	33	anti-parallel
Strand 3	H	39	40	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	25	36	parallel
Strand 3	I	65	75	anti-parallel
Strand 4	I	78	88	anti-parallel
Strand 5	I	50	54	parallel
Strand 6	I	41	45	anti-parallel
Strand 7	I	25	36	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	200	217	parallel
Strand 3	J	314	324	anti-parallel
Strand 4	J	328	337	anti-parallel
Strand 5	J	260	266	parallel
Strand 6	J	245	255	anti-parallel
Strand 7	J	200	217	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	226	227	first strand
Strand 2	J	234	235	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	21	first strand
Strand 2	K	31	33	anti-parallel
Strand 3	K	39	40	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	55	first strand
Strand 2	K	61	67	anti-parallel
Strand 3	K	72	78	anti-parallel
Strand 4	K	107	116	parallel
Strand 5	K	93	102	anti-parallel
Strand 6	K	42	49	anti-parallel
Strand 7	K	61	67	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	25	36	parallel
Strand 3	L	66	75	anti-parallel
Strand 4	L	78	88	anti-parallel
Strand 5	L	50	54	parallel
Strand 6	L	41	45	anti-parallel
Strand 7	L	25	36	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C5Y