Analysis of interatomic Contacts of Structural Units in PDB entry:
8C61

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C61 entry

There are 8 chains in PDB entry 8C61 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 29	SER 358
B	MET 1	GLY 75
C	MET 1	GLY 76
D	SER 30	THR 359
E	MET 1	GLY 75
F	MET 1	GLY 76
G	ILE 27	GLN 360
H	MET 1	SER 20

There are 72 helices in PDB entry 8C61. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	54	Right-handed alpha
Helix 2	AA2	A	54	63	Right-handed alpha
Helix 3	AA3	A	74	89	Right-handed alpha
Helix 4	AA4	A	96	107	Right-handed alpha
Helix 5	AA5	A	120	137	Right-handed alpha
Helix 6	AA6	A	150	156	Right-handed alpha
Helix 7	AA7	A	187	198	Right-handed alpha
Helix 8	AA8	A	208	218	Right-handed alpha
Helix 9	AA9	A	259	267	Right-handed alpha
Helix 10	AB1	A	273	277	Right-handed alpha
Helix 11	AB2	A	282	287	Right-handed alpha
Helix 12	AB3	A	329	341	Right-handed alpha
Helix 13	AB4	B	22	35	Right-handed alpha
Helix 14	AB5	B	37	39	Right-handed 310
Helix 15	AB6	C	22	35	Right-handed alpha
Helix 16	AB7	C	37	39	Right-handed 310
Helix 17	AB8	C	56	60	Right-handed 310
Helix 18	AB9	D	41	54	Right-handed alpha
Helix 19	AC1	D	54	63	Right-handed alpha
Helix 20	AC2	D	74	89	Right-handed alpha
Helix 21	AC3	D	96	107	Right-handed alpha
Helix 22	AC4	D	121	136	Right-handed alpha
Helix 23	AC5	D	150	155	Right-handed alpha
Helix 24	AC6	D	187	196	Right-handed alpha
Helix 25	AC7	D	208	218	Right-handed alpha
Helix 26	AC8	D	259	267	Right-handed alpha
Helix 27	AC9	D	274	276	Right-handed 310
Helix 28	AD1	D	282	287	Right-handed alpha
Helix 29	AD2	D	329	340	Right-handed alpha
Helix 30	AD3	E	22	35	Right-handed alpha
Helix 31	AD4	E	37	39	Right-handed 310
Helix 32	AD5	E	55	60	Right-handed 310
Helix 33	AD6	F	22	35	Right-handed alpha
Helix 34	AD7	F	37	39	Right-handed 310
Helix 35	AD8	F	55	60	Right-handed 310
Helix 36	AD9	G	41	54	Right-handed alpha
Helix 37	AE1	G	54	62	Right-handed alpha
Helix 38	AE2	G	74	89	Right-handed alpha
Helix 39	AE3	G	96	107	Right-handed alpha
Helix 40	AE4	G	120	137	Right-handed alpha
Helix 41	AE5	G	150	156	Right-handed alpha
Helix 42	AE6	G	187	199	Right-handed alpha
Helix 43	AE7	G	208	219	Right-handed alpha
Helix 44	AE8	G	259	266	Right-handed alpha
Helix 45	AE9	G	274	276	Right-handed 310
Helix 46	AF1	G	282	287	Right-handed alpha
Helix 47	AF2	G	329	340	Right-handed alpha
Helix 48	AF3	H	22	35	Right-handed alpha
Helix 49	AF4	H	37	39	Right-handed 310
Helix 50	AF5	H	56	60	Right-handed 310
Helix 51	AF6	I	22	35	Right-handed alpha
Helix 52	AF7	I	37	39	Right-handed 310
Helix 53	AF8	I	56	60	Right-handed 310
Helix 54	AF9	J	41	54	Right-handed alpha
Helix 55	AG1	J	54	64	Right-handed alpha
Helix 56	AG2	J	74	89	Right-handed alpha
Helix 57	AG3	J	96	107	Right-handed alpha
Helix 58	AG4	J	120	134	Right-handed alpha
Helix 59	AG5	J	150	155	Right-handed alpha
Helix 60	AG6	J	187	194	Right-handed alpha
Helix 61	AG7	J	194	201	Right-handed alpha
Helix 62	AG8	J	207	218	Right-handed alpha
Helix 63	AG9	J	259	266	Right-handed alpha
Helix 64	AH1	J	274	276	Right-handed 310
Helix 65	AH2	J	282	287	Right-handed alpha
Helix 66	AH3	J	329	340	Right-handed alpha
Helix 67	AH4	K	22	35	Right-handed alpha
Helix 68	AH5	K	37	39	Right-handed 310
Helix 69	AH6	K	55	60	Right-handed 310
Helix 70	AH7	L	22	34	Right-handed alpha
Helix 71	AH8	L	37	39	Right-handed 310
Helix 72	AH9	L	56	60	Right-handed 310

There are 29 sheets in PDB entry 8C61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	93	95	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	158	163	anti-parallel
Strand 3	A	236	239	anti-parallel
Strand 4	A	279	280	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	245	251	parallel
Strand 3	A	343	350	anti-parallel
Strand 4	A	289	299	anti-parallel
Strand 5	A	270	272	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	245	251	parallel
Strand 3	A	343	350	anti-parallel
Strand 4	A	289	299	anti-parallel
Strand 5	A	302	309	anti-parallel
Strand 6	A	314	319	anti-parallel
Strand 7	A	322	327	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	224	first strand
Strand 2	A	232	234	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	66	71	parallel
Strand 4	B	41	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	7	anti-parallel
Strand 3	C	66	71	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	93	94	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	120	first strand
Strand 2	E	74	75	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	180	first strand
Strand 2	D	158	163	anti-parallel
Strand 3	D	236	239	anti-parallel
Strand 4	D	279	280	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	186	first strand
Strand 2	D	245	251	parallel
Strand 3	D	343	350	anti-parallel
Strand 4	D	289	298	anti-parallel
Strand 5	D	270	272	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	186	first strand
Strand 2	D	245	251	parallel
Strand 3	D	343	350	anti-parallel
Strand 4	D	289	298	anti-parallel
Strand 5	D	303	309	anti-parallel
Strand 6	D	314	319	anti-parallel
Strand 7	D	322	327	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	224	first strand
Strand 2	D	232	234	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	2	6	anti-parallel
Strand 3	E	66	71	parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	16	first strand
Strand 2	F	2	7	anti-parallel
Strand 3	F	66	71	parallel
Strand 4	F	41	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	33	first strand
Strand 2	G	93	94	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	180	first strand
Strand 2	G	158	164	anti-parallel
Strand 3	G	232	239	anti-parallel
Strand 4	G	222	224	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	180	first strand
Strand 2	G	158	164	anti-parallel
Strand 3	G	232	239	anti-parallel
Strand 4	G	279	280	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	186	first strand
Strand 2	G	245	251	parallel
Strand 3	G	343	350	anti-parallel
Strand 4	G	289	299	anti-parallel
Strand 5	G	270	272	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	186	first strand
Strand 2	G	245	251	parallel
Strand 3	G	343	350	anti-parallel
Strand 4	G	289	299	anti-parallel
Strand 5	G	302	308	anti-parallel
Strand 6	G	315	319	anti-parallel
Strand 7	G	322	327	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	16	first strand
Strand 2	H	2	6	anti-parallel
Strand 3	H	66	71	parallel
Strand 4	H	41	45	anti-parallel
Strand 5	H	48	49	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	16	first strand
Strand 2	I	2	6	anti-parallel
Strand 3	I	66	71	parallel
Strand 4	I	41	45	anti-parallel
Strand 5	I	48	49	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	33	first strand
Strand 2	J	93	94	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	180	first strand
Strand 2	J	158	164	anti-parallel
Strand 3	J	232	239	anti-parallel
Strand 4	J	222	224	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	180	first strand
Strand 2	J	158	164	anti-parallel
Strand 3	J	232	239	anti-parallel
Strand 4	J	279	280	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	182	186	first strand
Strand 2	J	245	251	parallel
Strand 3	J	343	350	anti-parallel
Strand 4	J	289	299	anti-parallel
Strand 5	J	270	272	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	182	186	first strand
Strand 2	J	245	251	parallel
Strand 3	J	343	350	anti-parallel
Strand 4	J	289	299	anti-parallel
Strand 5	J	302	309	anti-parallel
Strand 6	J	314	319	anti-parallel
Strand 7	J	322	327	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	16	first strand
Strand 2	K	2	6	anti-parallel
Strand 3	K	66	71	parallel
Strand 4	K	41	45	anti-parallel
Strand 5	K	48	49	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	4	7	anti-parallel
Strand 3	L	66	71	parallel
Strand 4	L	41	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C61

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C61