Analysis of interatomic Contacts of Structural Units in PDB entry:
8C65


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C65 entry

There are 2 chains in PDB entry 8C65 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 42ASN 304
B
 GLN 42ASN 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8C65. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 59Right-handed alpha
Helix 2
AA2
A
104 109Right-handed 310
Helix 3
AA3
A
110 117Right-handed alpha
Helix 4
AA4
A
133 153Right-handed alpha
Helix 5
AA5
A
174 187Right-handed alpha
Helix 6
AA6
A
228 236Right-handed alpha
Helix 7
AA7
A
260 277Right-handed alpha
Helix 8
AA8
A
279 281Right-handed 310
Helix 9
AA9
A
282 288Right-handed alpha
Helix 10
AB1
B
53 59Right-handed alpha
Helix 11
AB2
B
104 109Right-handed 310
Helix 12
AB3
B
110 117Right-handed alpha
Helix 13
AB4
B
133 153Right-handed alpha
Helix 14
AB5
B
174 187Right-handed alpha
Helix 15
AB6
B
228 236Right-handed alpha
Helix 16
AB7
B
260 277Right-handed alpha
Helix 17
AB8
B
279 281Right-handed 310
Helix 18
AB9
B
282 288Right-handed alpha
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There are 4 sheets in PDB entry 8C65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
121 126anti-parallel
Strand 4
A
92 98parallel
Strand 5
A
163 173parallel
Strand 6
A
192 196parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
241 246parallel
Strand 3
A
295 301anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
79 85anti-parallel
Strand 3
B
121 126anti-parallel
Strand 4
B
92 98parallel
Strand 5
B
163 173parallel
Strand 6
B
192 196parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 217first strand
Strand 2
B
241 246parallel
Strand 3
B
295 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il