Analysis of interatomic Contacts of Structural Units in PDB entry:
8C6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C6I entry

There is 1 chain in PDB entry 8C6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 112LYS 1381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8C6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
248 252Right-handed 310
Helix 2
AA2
A
292 303Right-handed alpha
Helix 3
AA3
A
323 335Right-handed alpha
Helix 4
AA4
A
338 342Right-handed 310
Helix 5
AA5
A
441 445Right-handed 310
Helix 6
AA6
A
636 641Right-handed alpha
Helix 7
AA7
A
696 700Right-handed 310
Helix 8
AA8
A
707 711Right-handed 310
Helix 9
AA9
A
760 764Right-handed 310
Helix 10
AB1
A
942 947Right-handed alpha
Helix 11
AB2
A
1106 1113Right-handed alpha
Helix 12
AB3
A
1166 1171Right-handed alpha
Helix 13
AB4
A
1219 1226Right-handed alpha
Helix 14
AB5
A
1268 1271Right-handed 310
Helix 15
AB6
A
1272 1279Right-handed alpha
Helix 16
AB7
A
1370 1379Right-handed alpha
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There are 14 sheets in PDB entry 8C6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
140 143parallel
Strand 3
A
159 162parallel
Strand 4
A
186 189parallel
Strand 5
A
229 233parallel
Strand 6
A
528 532parallel
Strand 7
A
568 570parallel
Strand 8
A
591 593parallel
Strand 9
A
616 618parallel
Strand 10
A
673 675parallel
Strand 11
A
716 724parallel
Strand 12
A
772 780parallel
Strand 13
A
800 802parallel
Strand 14
A
830 832parallel
Strand 15
A
884 886parallel
Strand 16
A
919 920parallel
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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 537first strand
Strand 2
A
573 575parallel
Strand 3
A
596 601parallel
Strand 4
A
621 626parallel
Strand 5
A
678 682parallel
Strand 6
A
716 724parallel
Strand 7
A
772 780parallel
Strand 8
A
794 797parallel
Strand 9
A
824 827parallel
Strand 10
A
878 881parallel
Strand 11
A
914 916parallel
Strand 12
A
949 952parallel
Strand 13
A
963 967anti-parallel
Strand 14
A
986 989anti-parallel
Strand 15
A
979 981anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 135first strand
Strand 2
A
147 154parallel
Strand 3
A
178 181parallel
Strand 4
A
221 224parallel
Strand 5
A
519 522parallel
Strand 6
A
550 556parallel
Strand 7
A
582 588parallel
Strand 8
A
605 607parallel
Strand 9
A
663 667parallel
Strand 10
A
685 692parallel
Strand 11
A
727 735parallel
Strand 12
A
751 752anti-parallel
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There are 17 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 496first strand
Strand 2
A
200 204parallel
Strand 3
A
172 176parallel
Strand 4
A
147 154parallel
Strand 5
A
178 181parallel
Strand 6
A
221 224parallel
Strand 7
A
519 522parallel
Strand 8
A
550 556parallel
Strand 9
A
582 588parallel
Strand 10
A
605 607parallel
Strand 11
A
663 667parallel
Strand 12
A
685 692parallel
Strand 13
A
727 735parallel
Strand 14
A
785 789parallel
Strand 15
A
806 810parallel
Strand 16
A
869 873parallel
Strand 17
A
897 901parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
484 487anti-parallel
Strand 3
A
432 435anti-parallel
Strand 4
A
446 451anti-parallel
Strand 5
A
460 463anti-parallel
Strand 6
A
416 419anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 262first strand
Strand 2
A
403 412anti-parallel
Strand 3
A
390 400anti-parallel
Strand 4
A
378 384anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 285first strand
Strand 2
A
267 272anti-parallel
Strand 3
A
309 314anti-parallel
Strand 4
A
347 353anti-parallel
Strand 5
A
362 366anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
479 480anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
848 850first strand
Strand 2
A
857 859anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1034first strand
Strand 2
A
993 1000anti-parallel
Strand 3
A
1037 1039anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1034first strand
Strand 2
A
993 1000anti-parallel
Strand 3
A
1055 1061anti-parallel
Strand 4
A
1149 1157anti-parallel
Strand 5
A
1080 1088anti-parallel
Strand 6
A
1095 1100anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1015 1022first strand
Strand 2
A
1008 1012anti-parallel
Strand 3
A
1043 1048anti-parallel
Strand 4
A
1068 1074parallel
Strand 5
A
1127 1133anti-parallel
Strand 6
A
1118 1122anti-parallel
Strand 7
A
1102 1103parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1237 1240first strand
Strand 2
A
1229 1233anti-parallel
Strand 3
A
1210 1217anti-parallel
Strand 4
A
1347 1354anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1258 1266first strand
Strand 2
A
1244 1251anti-parallel
Strand 3
A
1286 1292anti-parallel
Strand 4
A
1321 1326anti-parallel
Strand 5
A
1336 1339anti-parallel
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