Analysis of interatomic Contacts of Structural Units in PDB entry:
8C6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C6Y entry

There is 1 chain in PDB entry 8C6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 31LYS 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8C6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 64Right-handed alpha
Helix 2
AA2
A
73 77Right-handed 310
Helix 3
AA3
A
117 125Right-handed alpha
Helix 4
AA4
A
134 138Right-handed 310
Helix 5
AA5
A
170 176Right-handed alpha
Helix 6
AA6
A
184 199Right-handed alpha
Helix 7
AA7
A
242 252Right-handed alpha
Helix 8
AA8
A
262 264Right-handed 310
Helix 9
AA9
A
265 272Right-handed alpha
Helix 10
AB1
A
294 299Right-handed alpha
Helix 11
AB2
A
299 309Right-handed alpha
Helix 12
AB3
A
311 320Right-handed alpha
Helix 13
AB4
A
332 339Right-handed 310
Helix 14
AB5
A
349 360Right-handed alpha
Helix 15
AB6
A
378 393Right-handed alpha
Helix 16
AB7
A
409 413Right-handed 310
Helix 17
AB8
A
430 436Right-handed alpha
Helix 18
AB9
A
439 444Right-handed alpha
Helix 19
AC1
A
450 463Right-handed alpha
Helix 20
AC2
A
466 484Right-handed alpha
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There are 5 sheets in PDB entry 8C6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 212first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
35 39parallel
Strand 5
A
257 261parallel
Strand 6
A
493 499anti-parallel
Strand 7
A
275 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
84 86anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 96first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
159 163anti-parallel
Strand 4
A
153 156anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 401first strand
Strand 2
A
367 371parallel
Strand 3
A
415 421parallel
Strand 4
A
284 290anti-parallel
Strand 5
A
486 490anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
519 520anti-parallel
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