Analysis of interatomic Contacts of Structural Units in PDB entry:
8C79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C79 entry

There are 2 chains in PDB entry 8C79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLN 478
B
 SER 1GLN 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8C79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
33 44Right-handed alpha
Helix 3
AA3
A
58 65Right-handed alpha
Helix 4
AA4
A
79 90Right-handed alpha
Helix 5
AA5
A
106 119Right-handed alpha
Helix 6
AA6
A
131 139Right-handed alpha
Helix 7
AA7
A
147 162Right-handed alpha
Helix 8
AA8
A
179 208Right-handed alpha
Helix 9
AA9
A
211 227Right-handed alpha
Helix 10
AB1
A
231 243Right-handed alpha
Helix 11
AB2
A
250 255Right-handed alpha
Helix 12
AB3
A
263 276Right-handed alpha
Helix 13
AB4
A
279 294Right-handed alpha
Helix 14
AB5
A
294 305Right-handed alpha
Helix 15
AB6
A
323 356Right-handed alpha
Helix 16
AB7
A
360 367Right-handed alpha
Helix 17
AB8
A
378 389Right-handed alpha
Helix 18
AB9
A
394 398Right-handed 310
Helix 19
AC1
A
399 421Right-handed alpha
Helix 20
AC2
A
425 438Right-handed alpha
Helix 21
AC3
A
443 458Right-handed alpha
Helix 22
AC4
B
10 23Right-handed alpha
Helix 23
AC5
B
33 44Right-handed alpha
Helix 24
AC6
B
58 65Right-handed alpha
Helix 25
AC7
B
79 90Right-handed alpha
Helix 26
AC8
B
106 119Right-handed alpha
Helix 27
AC9
B
131 139Right-handed alpha
Helix 28
AD1
B
147 154Right-handed alpha
Helix 29
AD2
B
154 162Right-handed alpha
Helix 30
AD3
B
179 208Right-handed alpha
Helix 31
AD4
B
212 227Right-handed alpha
Helix 32
AD5
B
231 243Right-handed alpha
Helix 33
AD6
B
250 255Right-handed alpha
Helix 34
AD7
B
263 276Right-handed alpha
Helix 35
AD8
B
279 294Right-handed alpha
Helix 36
AD9
B
294 305Right-handed alpha
Helix 37
AE1
B
323 356Right-handed alpha
Helix 38
AE2
B
360 367Right-handed alpha
Helix 39
AE3
B
378 389Right-handed alpha
Helix 40
AE4
B
394 398Right-handed 310
Helix 41
AE5
B
399 421Right-handed alpha
Helix 42
AE6
B
425 439Right-handed alpha
Helix 43
AE7
B
443 458Right-handed alpha
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There are 4 sheets in PDB entry 8C79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
27 30parallel
Strand 3
A
4 7parallel
Strand 4
A
71 74parallel
Strand 5
A
98 101parallel
Strand 6
A
123 130parallel
Strand 7
A
141 146anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 462first strand
Strand 2
A
469 470anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
27 30parallel
Strand 3
B
4 7parallel
Strand 4
B
71 74parallel
Strand 5
B
98 101parallel
Strand 6
B
123 130parallel
Strand 7
B
141 146anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 462first strand
Strand 2
B
469 470anti-parallel
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