Analysis of interatomic Contacts of Structural Units in PDB entry:
8C7G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C7G entry

There are 3 chains in PDB entry 8C7G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 5	ALA 633
B	GLN 6	ASP 484
C	TYR 104	PHE 528

There are 46 helices in PDB entry 8C7G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	358	363	Right-handed alpha
Helix 2	AA2	A	365	374	Right-handed alpha
Helix 3	AA3	A	379	393	Right-handed alpha
Helix 4	AA4	A	399	423	Right-handed alpha
Helix 5	AA5	A	448	458	Right-handed alpha
Helix 6	AA6	A	465	479	Right-handed alpha
Helix 7	AA7	A	484	498	Right-handed alpha
Helix 8	AA8	A	500	511	Right-handed alpha
Helix 9	AA9	A	516	526	Right-handed alpha
Helix 10	AB1	A	530	544	Right-handed alpha
Helix 11	AB2	A	546	558	Right-handed alpha
Helix 12	AB3	A	559	571	Right-handed alpha
Helix 13	AB4	A	578	589	Right-handed alpha
Helix 14	AB5	A	590	610	Right-handed alpha
Helix 15	AB6	A	615	619	Right-handed 310
Helix 16	AB7	A	620	631	Right-handed alpha
Helix 17	AB8	B	28	31	Right-handed 310
Helix 18	AB9	B	42	61	Right-handed alpha
Helix 19	AC1	B	65	69	Right-handed 310
Helix 20	AC2	B	113	116	Right-handed 310
Helix 21	AC3	B	117	137	Right-handed alpha
Helix 22	AC4	B	138	142	Right-handed 310
Helix 23	AC5	B	151	168	Right-handed alpha
Helix 24	AC6	B	178	184	Right-handed alpha
Helix 25	AC7	B	192	201	Right-handed alpha
Helix 26	AC8	B	204	209	Right-handed alpha
Helix 27	AC9	B	230	245	Right-handed alpha
Helix 28	AD1	B	332	361	Right-handed alpha
Helix 29	AD2	B	404	415	Right-handed alpha
Helix 30	AD3	B	461	477	Right-handed alpha
Helix 31	AD4	C	105	108	Right-handed 310
Helix 32	AD5	C	109	114	Right-handed alpha
Helix 33	AD6	C	140	155	Right-handed alpha
Helix 34	AD7	C	189	208	Right-handed alpha
Helix 35	AD8	C	209	220	Right-handed alpha
Helix 36	AD9	C	232	240	Right-handed alpha
Helix 37	AE1	C	252	259	Right-handed alpha
Helix 38	AE2	C	267	282	Right-handed alpha
Helix 39	AE3	C	311	325	Right-handed alpha
Helix 40	AE4	C	326	330	Right-handed 310
Helix 41	AE5	C	372	390	Right-handed alpha
Helix 42	AE6	C	392	402	Right-handed alpha
Helix 43	AE7	C	406	414	Right-handed alpha
Helix 44	AE8	C	437	441	Right-handed 310
Helix 45	AE9	C	442	462	Right-handed alpha
Helix 46	AF1	C	498	521	Right-handed alpha

There are 15 sheets in PDB entry 8C7G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	352	354	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	348	350	anti-parallel
Strand 3	A	341	343	anti-parallel
Strand 4	A	334	335	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	36	41	anti-parallel
Strand 3	A	47	51	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	83	89	anti-parallel
Strand 3	A	92	97	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	122	first strand
Strand 2	A	127	132	anti-parallel
Strand 3	A	135	142	anti-parallel
Strand 4	A	147	155	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	169	173	anti-parallel
Strand 3	A	180	186	anti-parallel
Strand 4	A	189	192	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	215	first strand
Strand 2	A	218	226	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	248	254	anti-parallel
Strand 5	A	295	298	parallel
Strand 6	A	290	292	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	266	first strand
Strand 2	A	269	273	anti-parallel
Strand 3	A	280	283	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	312	first strand
Strand 2	A	324	325	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	98	99	anti-parallel
Strand 3	B	110	111	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	36	first strand
Strand 2	B	11	19	anti-parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	77	82	anti-parallel
Strand 5	B	71	74	anti-parallel
Strand 6	C	160	164	anti-parallel
Strand 7	C	169	174	anti-parallel
Strand 8	C	178	184	anti-parallel
Strand 9	C	117	123	anti-parallel
Strand 10	C	128	131	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	390	393	parallel
Strand 3	B	380	385	anti-parallel
Strand 4	B	449	456	anti-parallel
Strand 5	B	439	445	anti-parallel
Strand 6	B	429	435	anti-parallel
Strand 7	C	467	473	anti-parallel
Strand 8	C	478	483	anti-parallel
Strand 9	C	488	493	anti-parallel
Strand 10	C	418	423	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	225	first strand
Strand 2	B	214	219	anti-parallel
Strand 3	B	318	325	anti-parallel
Strand 4	B	305	315	anti-parallel
Strand 5	B	295	300	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	430	431	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	337	first strand
Strand 2	C	348	354	anti-parallel
Strand 3	C	362	367	anti-parallel
Strand 4	C	288	294	anti-parallel
Strand 5	C	299	304	anti-parallel
Strand 6	C	526	527	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C7G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C7G