Analysis of interatomic Contacts of Structural Units in PDB entry:
8C7H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C7H entry

There are 7 chains in PDB entry 8C7H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 30	LEU 112
B	ALA 279	SER 390
C	THR 32	LEU 265
D	LEU 280	SER 390
I	VAL 33	GLU 523
L	GLU 15	LYS 227
K	ASP 21	PHE 229

There are 16 helices in PDB entry 8C7H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	50	Right-handed alpha
Helix 2	AA2	B	282	286	Right-handed alpha
Helix 3	AA3	C	37	57	Right-handed alpha
Helix 4	AA4	C	74	85	Right-handed alpha
Helix 5	AA5	C	99	104	Right-handed 310
Helix 6	AA6	C	136	144	Right-handed alpha
Helix 7	AA7	C	200	207	Right-handed alpha
Helix 8	AA8	D	281	287	Right-handed alpha
Helix 9	AA9	D	340	347	Right-handed alpha
Helix 10	AB1	I	65	70	Right-handed alpha
Helix 11	AB2	I	111	116	Right-handed alpha
Helix 12	AB3	I	139	145	Right-handed alpha
Helix 13	AB4	I	331	338	Right-handed alpha
Helix 14	AB5	I	509	513	Right-handed 310
Helix 15	AB6	L	42	46	Right-handed 310
Helix 16	AB7	K	99	103	Right-handed 310

There are 26 sheets in PDB entry 8C7H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	I	211	214	anti-parallel
Strand 3	I	232	233	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	373	389	anti-parallel
Strand 3	B	356	370	anti-parallel
Strand 4	B	311	313	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	373	389	anti-parallel
Strand 3	C	106	112	anti-parallel
Strand 4	C	257	262	anti-parallel
Strand 5	C	150	159	anti-parallel
Strand 6	C	194	199	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	321	323	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	301	first strand
Strand 2	B	316	318	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	173	first strand
Strand 2	C	179	187	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	296	first strand
Strand 2	D	321	323	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	301	first strand
Strand 2	D	316	317	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	313	first strand
Strand 2	D	361	370	anti-parallel
Strand 3	D	373	384	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	358	first strand
Strand 2	D	387	389	anti-parallel

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There are 19 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	55	first strand
Strand 2	I	77	79	parallel
Strand 3	I	101	103	parallel
Strand 4	I	128	130	parallel
Strand 5	I	153	155	parallel
Strand 6	I	177	179	parallel
Strand 7	I	201	203	parallel
Strand 8	I	222	224	parallel
Strand 9	I	247	249	parallel
Strand 10	I	269	271	parallel
Strand 11	I	319	321	parallel
Strand 12	I	343	345	parallel
Strand 13	I	367	369	parallel
Strand 14	I	390	392	parallel
Strand 15	I	414	416	parallel
Strand 16	I	447	449	parallel
Strand 17	I	470	472	parallel
Strand 18	I	495	497	parallel
Strand 19	I	518	520	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	64	first strand
Strand 2	I	87	88	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	163	164	first strand
Strand 2	I	187	188	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	353	356	first strand
Strand 2	I	377	380	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	457	458	first strand
Strand 2	I	480	481	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	19	first strand
Strand 2	L	37	39	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	35	first strand
Strand 2	L	92	97	anti-parallel
Strand 3	L	82	83	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	35	first strand
Strand 2	L	92	97	anti-parallel
Strand 3	L	86	87	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	73	first strand
Strand 2	L	60	65	anti-parallel
Strand 3	L	48	53	anti-parallel
Strand 4	L	106	112	anti-parallel
Strand 5	L	129	130	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	73	first strand
Strand 2	L	60	65	anti-parallel
Strand 3	L	48	53	anti-parallel
Strand 4	L	106	112	anti-parallel
Strand 5	L	135	136	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	151	first strand
Strand 2	L	164	169	anti-parallel
Strand 3	L	202	207	anti-parallel
Strand 4	L	189	191	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	24	26	first strand
Strand 2	K	39	45	anti-parallel
Strand 3	K	90	95	anti-parallel
Strand 4	K	82	87	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	33	first strand
Strand 2	K	122	126	parallel
Strand 3	K	104	110	anti-parallel
Strand 4	K	53	58	anti-parallel
Strand 5	K	66	70	anti-parallel
Strand 6	K	73	74	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	33	first strand
Strand 2	K	122	126	parallel
Strand 3	K	104	110	anti-parallel
Strand 4	K	117	118	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	136	138	first strand
Strand 2	K	153	159	anti-parallel
Strand 3	K	193	197	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	165	167	first strand
Strand 2	K	215	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C7H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C7H