Analysis of interatomic Contacts of Structural Units in PDB entry:
8C7I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C7I entry

There are 2 chains in PDB entry 8C7I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -261LEU -191
A
 VAL -187PRO 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8C7I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-252 -246Right-handed 310
Helix 2
AA2
A
-199 -194Right-handed 310
Helix 3
AA3
A
-187 -183Right-handed 310
Helix 4
AA4
A
-180 -174Right-handed 310
Helix 5
AA5
A
-173 -168Right-handed alpha
Helix 6
AA6
A
-99 -96Right-handed 310
Helix 7
AA7
A
-25 -21Right-handed 310
Helix 8
AA8
A
-19 -15Right-handed 310
Helix 9
AA9
A
2 6Right-handed 310
Helix 10
AB1
A
23 42Right-handed alpha
Helix 11
AB2
A
58 71Right-handed alpha
Helix 12
AB3
A
97 102Right-handed alpha
Helix 13
AB4
A
105 115Right-handed alpha
Helix 14
AB5
A
117 122Right-handed alpha
Helix 15
AB6
A
125 142Right-handed alpha
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There are 2 sheets in PDB entry 8C7I. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-244 -233first strand
Strand 2
A
-230 -219anti-parallel
Strand 3
A
-214 -207anti-parallel
Strand 4
A
-38 -28anti-parallel
Strand 5
A
-56 -47anti-parallel
Strand 6
A
-107 -100anti-parallel
Strand 7
A
-95 -85anti-parallel
Strand 8
A
-79 -68anti-parallel
Strand 9
A
-163 -155anti-parallel
Strand 10
A
-150 -140anti-parallel
Strand 11
A
-137 -127anti-parallel
Strand 12
A
-244 -233parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
44 50parallel
Strand 3
A
80 86parallel
Strand 4
A
92 96anti-parallel
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