Analysis of interatomic Contacts of Structural Units in PDB entry:
8C7T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C7T entry

There are 4 chains in PDB entry 8C7T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1GLU 259
B
 GLY -1LYS 260
C
 ALA 0ILE 181
D
 GLY -1LYS 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8C7T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 16Right-handed alpha
Helix 2
AA2
A
29 41Right-handed alpha
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
68 72Right-handed 310
Helix 5
AA5
A
79 85Right-handed alpha
Helix 6
AA6
A
104 109Right-handed alpha
Helix 7
AA7
A
141 183Right-handed alpha
Helix 8
AA8
A
185 200Right-handed alpha
Helix 9
AA9
A
207 216Right-handed alpha
Helix 10
AB1
A
218 233Right-handed alpha
Helix 11
AB2
A
252 259Right-handed alpha
Helix 12
AB3
B
0 16Right-handed alpha
Helix 13
AB4
B
29 41Right-handed alpha
Helix 14
AB5
B
61 65Right-handed 310
Helix 15
AB6
B
66 72Right-handed 310
Helix 16
AB7
B
79 87Right-handed alpha
Helix 17
AB8
B
104 109Right-handed 310
Helix 18
AB9
B
141 183Right-handed alpha
Helix 19
AC1
B
185 199Right-handed alpha
Helix 20
AC2
B
207 216Right-handed alpha
Helix 21
AC3
B
218 233Right-handed alpha
Helix 22
AC4
B
241 243Right-handed 310
Helix 23
AC5
B
252 260Right-handed alpha
Helix 24
AC6
C
1 16Right-handed alpha
Helix 25
AC7
C
28 41Right-handed alpha
Helix 26
AC8
C
67 71Right-handed 310
Helix 27
AC9
C
79 85Right-handed alpha
Helix 28
AD1
C
104 110Right-handed 310
Helix 29
AD2
C
141 166Right-handed alpha
Helix 30
AD3
C
166 181Right-handed alpha
Helix 31
AD4
D
0 16Right-handed alpha
Helix 32
AD5
D
29 40Right-handed alpha
Helix 33
AD6
D
61 65Right-handed 310
Helix 34
AD7
D
66 71Right-handed alpha
Helix 35
AD8
D
77 87Right-handed alpha
Helix 36
AD9
D
104 111Right-handed alpha
Helix 37
AE1
D
141 184Right-handed alpha
Helix 38
AE2
D
185 199Right-handed alpha
Helix 39
AE3
D
207 216Right-handed alpha
Helix 40
AE4
D
218 233Right-handed alpha
Helix 41
AE5
D
241 243Right-handed 310
Helix 42
AE6
D
252 260Right-handed alpha
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There are 7 sheets in PDB entry 8C7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
126 135anti-parallel
Strand 4
A
115 123anti-parallel
Strand 5
A
91 94anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
235 241anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
126 135anti-parallel
Strand 4
B
115 123anti-parallel
Strand 5
B
91 95anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 206first strand
Strand 2
B
245 249anti-parallel
Strand 3
B
235 239anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 57first strand
Strand 2
C
43 48anti-parallel
Strand 3
C
126 135anti-parallel
Strand 4
C
115 123anti-parallel
Strand 5
C
91 94anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 57first strand
Strand 2
D
43 48anti-parallel
Strand 3
D
126 135anti-parallel
Strand 4
D
115 123anti-parallel
Strand 5
D
91 94anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
203 206first strand
Strand 2
D
245 249anti-parallel
Strand 3
D
235 239anti-parallel
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