Analysis of interatomic Contacts of Structural Units in PDB entry:
8C7U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C7U entry

There are 6 chains in PDB entry 8C7U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LYS 260
B
 ALA 0LYS 260
C
 MET 1LYS 260
D
 GLY -1LYS 260
E
 T 2 C 30
F
 G 1 G 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8C7U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 18Right-handed alpha
Helix 2
AA2
A
29 41Right-handed alpha
Helix 3
AA3
A
64 74Right-handed alpha
Helix 4
AA4
A
77 85Right-handed alpha
Helix 5
AA5
A
141 182Right-handed alpha
Helix 6
AA6
A
185 200Right-handed alpha
Helix 7
AA7
A
207 216Right-handed alpha
Helix 8
AA8
A
218 232Right-handed alpha
Helix 9
AA9
A
241 243Right-handed 310
Helix 10
AB1
A
252 260Right-handed alpha
Helix 11
AB2
B
1 20Right-handed alpha
Helix 12
AB3
B
22 26Right-handed 310
Helix 13
AB4
B
29 41Right-handed alpha
Helix 14
AB5
B
64 74Right-handed alpha
Helix 15
AB6
B
77 85Right-handed alpha
Helix 16
AB7
B
141 182Right-handed alpha
Helix 17
AB8
B
185 200Right-handed alpha
Helix 18
AB9
B
207 215Right-handed alpha
Helix 19
AC1
B
218 232Right-handed alpha
Helix 20
AC2
B
241 243Right-handed 310
Helix 21
AC3
B
253 260Right-handed alpha
Helix 22
AC4
C
2 17Right-handed alpha
Helix 23
AC5
C
28 41Right-handed alpha
Helix 24
AC6
C
64 73Right-handed alpha
Helix 25
AC7
C
77 85Right-handed alpha
Helix 26
AC8
C
86 88Right-handed 310
Helix 27
AC9
C
104 108Right-handed 310
Helix 28
AD1
C
141 182Right-handed alpha
Helix 29
AD2
C
185 199Right-handed alpha
Helix 30
AD3
C
207 216Right-handed alpha
Helix 31
AD4
C
218 232Right-handed alpha
Helix 32
AD5
C
241 243Right-handed 310
Helix 33
AD6
C
253 260Right-handed alpha
Helix 34
AD7
D
0 18Right-handed alpha
Helix 35
AD8
D
29 40Right-handed alpha
Helix 36
AD9
D
67 74Right-handed alpha
Helix 37
AE1
D
77 85Right-handed alpha
Helix 38
AE2
D
141 182Right-handed alpha
Helix 39
AE3
D
185 200Right-handed alpha
Helix 40
AE4
D
207 216Right-handed alpha
Helix 41
AE5
D
218 232Right-handed alpha
Helix 42
AE6
D
241 243Right-handed 310
Helix 43
AE7
D
252 260Right-handed alpha
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There are 8 sheets in PDB entry 8C7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
126 135anti-parallel
Strand 4
A
115 123anti-parallel
Strand 5
A
91 94anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
238 239anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
126 135anti-parallel
Strand 4
B
115 123anti-parallel
Strand 5
B
91 94anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 206first strand
Strand 2
B
245 249anti-parallel
Strand 3
B
235 239anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 57first strand
Strand 2
C
43 48anti-parallel
Strand 3
C
126 135anti-parallel
Strand 4
C
115 123anti-parallel
Strand 5
C
91 94anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 206first strand
Strand 2
C
245 248anti-parallel
Strand 3
C
238 239anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 57first strand
Strand 2
D
43 48anti-parallel
Strand 3
D
127 135anti-parallel
Strand 4
D
115 122anti-parallel
Strand 5
D
91 94anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
203 206first strand
Strand 2
D
245 249anti-parallel
Strand 3
D
235 239anti-parallel
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