Analysis of interatomic Contacts of Structural Units in PDB entry:
8C80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C80 entry

There are 4 chains in PDB entry 8C80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 39SER 222
B
 VAL 19GLU 555
C
 TYR 7ASN 561
D
 GLN 3LYS 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8C80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 72Right-handed alpha
Helix 2
AA2
A
86 101Right-handed alpha
Helix 3
AA3
A
107 129Right-handed alpha
Helix 4
AA4
A
137 141Right-handed 310
Helix 5
AA5
A
158 179Right-handed alpha
Helix 6
AA6
A
182 198Right-handed alpha
Helix 7
AA7
B
21 36Right-handed alpha
Helix 8
AA8
B
39 50Right-handed alpha
Helix 9
AA9
B
53 73Right-handed alpha
Helix 10
AB1
B
89 100Right-handed alpha
Helix 11
AB2
B
115 120Right-handed alpha
Helix 12
AB3
B
161 176Right-handed alpha
Helix 13
AB4
B
189 204Right-handed alpha
Helix 14
AB5
B
213 216Right-handed 310
Helix 15
AB6
B
217 226Right-handed alpha
Helix 16
AB7
B
239 250Right-handed alpha
Helix 17
AB8
B
260 279Right-handed alpha
Helix 18
AB9
B
302 314Right-handed alpha
Helix 19
AC1
B
334 339Right-handed alpha
Helix 20
AC2
B
342 347Right-handed alpha
Helix 21
AC3
B
368 379Right-handed alpha
Helix 22
AC4
B
379 384Right-handed alpha
Helix 23
AC5
B
389 406Right-handed alpha
Helix 24
AC6
B
408 426Right-handed alpha
Helix 25
AC7
B
450 459Right-handed alpha
Helix 26
AC8
B
461 476Right-handed alpha
Helix 27
AC9
B
482 503Right-handed alpha
Helix 28
AD1
B
513 517Right-handed 310
Helix 29
AD2
B
534 555Right-handed alpha
Helix 30
AD3
C
21 26Right-handed alpha
Helix 31
AD4
C
57 86Right-handed alpha
Helix 32
AD5
C
90 94Right-handed 310
Helix 33
AD6
C
105 109Right-handed 310
Helix 34
AD7
C
115 117Right-handed 310
Helix 35
AD8
C
118 123Right-handed alpha
Helix 36
AD9
C
173 186Right-handed alpha
Helix 37
AE1
C
200 215Right-handed alpha
Helix 38
AE2
C
224 231Right-handed alpha
Helix 39
AE3
C
232 236Right-handed 310
Helix 40
AE4
C
250 261Right-handed alpha
Helix 41
AE5
C
273 286Right-handed alpha
Helix 42
AE6
C
313 324Right-handed alpha
Helix 43
AE7
C
345 350Right-handed alpha
Helix 44
AE8
C
378 389Right-handed alpha
Helix 45
AE9
C
390 395Right-handed alpha
Helix 46
AF1
C
399 410Right-handed alpha
Helix 47
AF2
C
422 427Right-handed alpha
Helix 48
AF3
C
427 444Right-handed alpha
Helix 49
AF4
C
464 476Right-handed alpha
Helix 50
AF5
C
484 488Right-handed 310
Helix 51
AF6
C
504 523Right-handed alpha
Helix 52
AF7
C
541 553Right-handed alpha
Helix 53
AF8
D
13 22Right-handed alpha
Helix 54
AF9
D
28 46Right-handed alpha
Helix 55
AG1
D
52 76Right-handed alpha
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There are 7 sheets in PDB entry 8C80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
208 210anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
132 137anti-parallel
Strand 3
B
142 149anti-parallel
Strand 4
B
505 506parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 211first strand
Strand 2
B
363 367anti-parallel
Strand 3
B
349 351anti-parallel
Strand 4
B
316 320parallel
Strand 5
B
286 291parallel
Strand 6
B
231 235parallel
Strand 7
B
252 256parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 436first strand
Strand 2
B
445 449anti-parallel
Strand 3
B
525 527anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 142first strand
Strand 2
C
147 159anti-parallel
Strand 3
C
478 479parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 222first strand
Strand 2
C
373 377anti-parallel
Strand 3
C
359 363anti-parallel
Strand 4
C
327 331parallel
Strand 5
C
297 300parallel
Strand 6
C
242 246parallel
Strand 7
C
263 267parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
455 460first strand
Strand 2
C
493 498anti-parallel
Strand 3
C
481 482anti-parallel
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