Analysis of interatomic Contacts of Structural Units in PDB entry:
8C81


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C81 entry

There are 5 chains in PDB entry 8C81 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 39SER 222
B
 ILE 18SER 556
C
 MET 1ASN 561
D
 GLN 3PHE 71
E
 THR 2PRO 617
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 76 helices in PDB entry 8C81. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 72Right-handed alpha
Helix 2
AA2
A
78 82Right-handed 310
Helix 3
AA3
A
86 102Right-handed alpha
Helix 4
AA4
A
107 129Right-handed alpha
Helix 5
AA5
A
146 151Right-handed alpha
Helix 6
AA6
A
152 155Right-handed 310
Helix 7
AA7
A
158 179Right-handed alpha
Helix 8
AA8
A
182 198Right-handed alpha
Helix 9
AA9
A
199 206Right-handed 310
Helix 10
AB1
B
19 36Right-handed alpha
Helix 11
AB2
B
39 50Right-handed alpha
Helix 12
AB3
B
53 72Right-handed alpha
Helix 13
AB4
B
89 100Right-handed alpha
Helix 14
AB5
B
112 114Right-handed 310
Helix 15
AB6
B
115 120Right-handed alpha
Helix 16
AB7
B
157 160Right-handed 310
Helix 17
AB8
B
161 176Right-handed alpha
Helix 18
AB9
B
189 203Right-handed alpha
Helix 19
AC1
B
217 222Right-handed alpha
Helix 20
AC2
B
223 225Right-handed 310
Helix 21
AC3
B
239 250Right-handed alpha
Helix 22
AC4
B
260 279Right-handed alpha
Helix 23
AC5
B
302 314Right-handed alpha
Helix 24
AC6
B
334 339Right-handed alpha
Helix 25
AC7
B
342 347Right-handed alpha
Helix 26
AC8
B
368 379Right-handed alpha
Helix 27
AC9
B
379 384Right-handed alpha
Helix 28
AD1
B
389 406Right-handed alpha
Helix 29
AD2
B
407 425Right-handed alpha
Helix 30
AD3
B
450 459Right-handed alpha
Helix 31
AD4
B
461 476Right-handed alpha
Helix 32
AD5
B
482 503Right-handed alpha
Helix 33
AD6
B
513 517Right-handed 310
Helix 34
AD7
B
534 554Right-handed alpha
Helix 35
AD8
C
19 28Right-handed alpha
Helix 36
AD9
C
57 86Right-handed alpha
Helix 37
AE1
C
90 94Right-handed 310
Helix 38
AE2
C
108 114Right-handed alpha
Helix 39
AE3
C
115 122Right-handed 310
Helix 40
AE4
C
173 186Right-handed alpha
Helix 41
AE5
C
200 215Right-handed alpha
Helix 42
AE6
C
224 233Right-handed alpha
Helix 43
AE7
C
234 236Right-handed 310
Helix 44
AE8
C
250 261Right-handed alpha
Helix 45
AE9
C
272 286Right-handed alpha
Helix 46
AF1
C
313 325Right-handed alpha
Helix 47
AF2
C
345 350Right-handed alpha
Helix 48
AF3
C
378 389Right-handed alpha
Helix 49
AF4
C
390 395Right-handed alpha
Helix 50
AF5
C
399 415Right-handed alpha
Helix 51
AF6
C
421 444Right-handed alpha
Helix 52
AF7
C
464 476Right-handed alpha
Helix 53
AF8
C
504 523Right-handed alpha
Helix 54
AF9
C
528 532Right-handed 310
Helix 55
AG1
C
541 549Right-handed alpha
Helix 56
AG2
D
13 22Right-handed alpha
Helix 57
AG3
D
25 46Right-handed alpha
Helix 58
AG4
D
52 71Right-handed alpha
Helix 59
AG5
E
42 46Right-handed 310
Helix 60
AG6
E
105 121Right-handed alpha
Helix 61
AG7
E
135 142Right-handed alpha
Helix 62
AG8
E
159 161Right-handed 310
Helix 63
AG9
E
162 168Right-handed alpha
Helix 64
AH1
E
169 179Right-handed 310
Helix 65
AH2
E
214 218Right-handed 310
Helix 66
AH3
E
282 297Right-handed alpha
Helix 67
AH4
E
307 326Right-handed alpha
Helix 68
AH5
E
345 355Right-handed alpha
Helix 69
AH6
E
398 418Right-handed alpha
Helix 70
AH7
E
426 429Right-handed 310
Helix 71
AH8
E
430 453Right-handed alpha
Helix 72
AH9
E
472 490Right-handed alpha
Helix 73
AI1
E
491 502Right-handed alpha
Helix 74
AI2
E
521 538Right-handed alpha
Helix 75
AI3
E
563 575Right-handed alpha
Helix 76
AI4
E
576 579Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 8C81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
208 210anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
132 137anti-parallel
Strand 3
B
142 149anti-parallel
Strand 4
B
505 506parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 211first strand
Strand 2
B
363 367anti-parallel
Strand 3
B
349 353anti-parallel
Strand 4
B
316 320parallel
Strand 5
B
286 290parallel
Strand 6
B
231 234parallel
Strand 7
B
252 255parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 436first strand
Strand 2
B
445 449anti-parallel
Strand 3
B
525 527anti-parallel
Strand 4
B
508 509anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 127first strand
Strand 2
C
133 142anti-parallel
Strand 3
C
147 159anti-parallel
Strand 4
C
478 479parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 222first strand
Strand 2
C
373 377anti-parallel
Strand 3
C
359 362anti-parallel
Strand 4
C
327 331parallel
Strand 5
C
297 302parallel
Strand 6
C
242 245parallel
Strand 7
C
263 266parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
455 460first strand
Strand 2
C
493 498anti-parallel
Strand 3
C
481 483anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 41first strand
Strand 2
E
28 32anti-parallel
Strand 3
E
13 18anti-parallel
Strand 4
E
5 10anti-parallel
Strand 5
E
53 55anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 63first strand
Strand 2
E
68 73anti-parallel
Strand 3
E
93 96anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 82first strand
Strand 2
E
85 90anti-parallel
Strand 3
E
124 126anti-parallel
Strand 4
E
183 184anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
186 193first strand
Strand 2
E
198 207anti-parallel
Strand 3
E
231 234anti-parallel
Strand 4
E
253 256anti-parallel
Strand 5
E
386 390parallel
Strand 6
E
298 303parallel
Strand 7
E
330 334parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
186 193first strand
Strand 2
E
198 207anti-parallel
Strand 3
E
237 240anti-parallel
Strand 4
E
247 251anti-parallel
Strand 5
E
367 371anti-parallel
Strand 6
E
379 382anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
263 266first strand
Strand 2
E
274 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
591 597first strand
Strand 2
E
603 610anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il