Analysis of interatomic Contacts of Structural Units in PDB entry:
8C83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C83 entry

There are 18 chains in PDB entry 8C83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
x	MET 13	SER 307
y	MET 1	GLY 76
2	U 1	U 1799
P	SER 2	PRO 207
R	GLY 34	ALA 249
S	ALA 2	GLN 259
T	MET 1	LYS 228
U	PRO 4	SER 187
V	GLY 2	LYS 199
W	PRO 2	GLY 185
X	GLU 4	ALA 145
Y	GLY 2	ASN 151
a	MET 1	ARG 87
b	THR 2	TYR 130
c	GLY 2	SER 145
d	SER 2	ASP 135
f	VAL 2	LYS 82
g	ALA 2	SER 61

There are 89 helices in PDB entry 8C83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	x	13	37	Right-handed alpha
Helix 2	AA2	x	39	72	Right-handed alpha
Helix 3	AA3	x	85	92	Right-handed alpha
Helix 4	AA4	x	121	147	Right-handed alpha
Helix 5	AA5	x	149	166	Right-handed alpha
Helix 6	AA6	x	177	191	Right-handed alpha
Helix 7	AA7	x	201	216	Right-handed alpha
Helix 8	AA8	x	216	224	Right-handed alpha
Helix 9	AA9	x	234	245	Right-handed alpha
Helix 10	AB1	x	250	261	Right-handed alpha
Helix 11	AB2	y	22	35	Right-handed alpha
Helix 12	AB3	P	10	18	Right-handed alpha
Helix 13	AB4	P	49	67	Right-handed alpha
Helix 14	AB5	P	69	71	Right-handed 310
Helix 15	AB6	P	82	93	Right-handed alpha
Helix 16	AB7	P	129	137	Right-handed alpha
Helix 17	AB8	P	166	186	Right-handed alpha
Helix 18	AB9	P	198	203	Right-handed 310
Helix 19	AC1	R	39	48	Right-handed alpha
Helix 20	AC2	R	53	59	Right-handed alpha
Helix 21	AC3	R	65	73	Right-handed alpha
Helix 22	AC4	R	120	135	Right-handed alpha
Helix 23	AC5	R	181	192	Right-handed alpha
Helix 24	AC6	R	206	220	Right-handed alpha
Helix 25	AC7	R	221	223	Right-handed 310
Helix 26	AC8	R	226	230	Right-handed 310
Helix 27	AC9	R	238	243	Right-handed alpha
Helix 28	AD1	S	15	19	Right-handed 310
Helix 29	AD2	S	44	50	Right-handed alpha
Helix 30	AD3	S	57	66	Right-handed alpha
Helix 31	AD4	S	94	96	Right-handed 310
Helix 32	AD5	S	117	121	Right-handed 310
Helix 33	AD6	S	133	135	Right-handed 310
Helix 34	AD7	S	247	258	Right-handed alpha
Helix 35	AD8	T	23	28	Right-handed 310
Helix 36	AD9	T	59	61	Right-handed 310
Helix 37	AE1	T	137	146	Right-handed alpha
Helix 38	AE2	T	152	156	Right-handed 310
Helix 39	AE3	T	180	226	Right-handed alpha
Helix 40	AE4	U	5	9	Right-handed alpha
Helix 41	AE5	U	14	30	Right-handed alpha
Helix 42	AE6	U	66	85	Right-handed alpha
Helix 43	AE7	U	113	116	Right-handed 310
Helix 44	AE8	U	117	130	Right-handed alpha
Helix 45	AE9	U	158	164	Right-handed 310
Helix 46	AF1	U	165	178	Right-handed alpha
Helix 47	AF2	V	6	10	Right-handed 310
Helix 48	AF3	V	25	27	Right-handed 310
Helix 49	AF4	V	88	93	Right-handed alpha
Helix 50	AF5	V	106	117	Right-handed alpha
Helix 51	AF6	V	136	146	Right-handed alpha
Helix 52	AF7	V	153	163	Right-handed alpha
Helix 53	AF8	V	186	197	Right-handed alpha
Helix 54	AF9	W	20	35	Right-handed alpha
Helix 55	AG1	W	39	62	Right-handed alpha
Helix 56	AG2	W	66	84	Right-handed alpha
Helix 57	AG3	W	100	106	Right-handed alpha
Helix 58	AG4	W	108	116	Right-handed alpha
Helix 59	AG5	W	121	130	Right-handed alpha
Helix 60	AG6	W	151	155	Right-handed 310
Helix 61	AG7	W	170	185	Right-handed alpha
Helix 62	AG8	X	45	51	Right-handed alpha
Helix 63	AG9	Y	29	43	Right-handed alpha
Helix 64	AH1	Y	46	57	Right-handed alpha
Helix 65	AH2	Y	62	67	Right-handed alpha
Helix 66	AH3	Y	70	78	Right-handed alpha
Helix 67	AH4	Y	85	105	Right-handed alpha
Helix 68	AH5	Y	108	132	Right-handed alpha
Helix 69	AH6	Y	142	150	Right-handed alpha
Helix 70	AH7	a	56	62	Right-handed alpha
Helix 71	AH8	a	64	76	Right-handed alpha
Helix 72	AH9	b	5	21	Right-handed alpha
Helix 73	AI1	b	31	44	Right-handed alpha
Helix 74	AI2	b	82	94	Right-handed alpha
Helix 75	AI3	b	113	120	Right-handed alpha
Helix 76	AI4	c	11	24	Right-handed alpha
Helix 77	AI5	c	27	34	Right-handed alpha
Helix 78	AI6	c	35	40	Right-handed alpha
Helix 79	AI7	c	91	96	Right-handed 310
Helix 80	AI8	c	132	137	Right-handed alpha
Helix 81	AI9	d	36	48	Right-handed alpha
Helix 82	AJ1	d	78	86	Right-handed alpha
Helix 83	AJ2	d	87	94	Right-handed alpha
Helix 84	AJ3	d	104	116	Right-handed alpha
Helix 85	AJ4	d	122	133	Right-handed alpha
Helix 86	AJ5	f	11	18	Right-handed alpha
Helix 87	AJ6	g	7	11	Right-handed 310
Helix 88	AJ7	g	12	18	Right-handed alpha
Helix 89	AJ8	g	32	44	Right-handed alpha

There are 30 sheets in PDB entry 8C83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	167	169	first strand
Strand 2	x	300	306	anti-parallel
Strand 3	x	286	291	anti-parallel
Strand 4	x	265	267	parallel
Strand 5	x	275	277	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	225	226	first strand
Strand 2	x	231	232	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	12	16	first strand
Strand 2	y	2	6	anti-parallel
Strand 3	y	66	71	parallel
Strand 4	y	41	45	anti-parallel
Strand 5	y	48	49	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	99	first strand
Strand 2	P	73	77	parallel
Strand 3	P	120	122	parallel
Strand 4	P	143	145	parallel
Strand 5	P	158	159	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	77	89	first strand
Strand 2	R	94	105	anti-parallel
Strand 3	R	110	118	anti-parallel
Strand 4	R	137	138	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	141	142	first strand
Strand 2	R	153	154	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	158	162	first strand
Strand 2	R	165	171	anti-parallel
Strand 3	R	196	201	anti-parallel
Strand 4	R	178	179	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	42	43	first strand
Strand 2	S	83	84	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	70	72	first strand
Strand 2	S	89	92	anti-parallel
Strand 3	S	97	100	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	102	103	first strand
Strand 2	S	109	110	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	122	125	first strand
Strand 2	S	159	162	anti-parallel
Strand 3	S	169	173	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	131	first strand
Strand 2	S	137	140	anti-parallel
Strand 3	S	146	148	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	179	183	first strand
Strand 2	S	225	230	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	195	199	first strand
Strand 2	S	207	211	anti-parallel
Strand 3	S	217	221	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	12	17	first strand
Strand 2	T	2	7	anti-parallel
Strand 3	T	106	115	parallel
Strand 4	T	49	57	anti-parallel
Strand 5	T	35	37	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	72	77	first strand
Strand 2	T	93	98	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	162	163	first strand
Strand 2	T	168	169	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	45	49	first strand
Strand 2	U	56	62	anti-parallel
Strand 3	U	88	94	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	180	184	first strand
Strand 2	U	148	154	parallel
Strand 3	U	135	142	anti-parallel
Strand 4	b	50	54	anti-parallel
Strand 5	b	60	64	anti-parallel
Strand 6	b	24	27	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	3	4	first strand
Strand 2	V	29	30	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	42	48	first strand
Strand 2	V	51	58	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	62	67	first strand
Strand 2	V	72	83	anti-parallel
Strand 3	V	101	104	anti-parallel
Strand 4	V	165	169	anti-parallel
Strand 5	V	181	183	anti-parallel
Strand 6	V	62	67	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	70	77	first strand
Strand 2	X	83	94	anti-parallel
Strand 3	X	99	110	anti-parallel
Strand 4	X	137	142	parallel
Strand 5	X	122	127	anti-parallel
Strand 6	X	70	77	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	32	39	first strand
Strand 2	a	45	55	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	72	74	first strand
Strand 2	b	123	129	anti-parallel
Strand 3	b	80	81	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	72	74	first strand
Strand 2	b	123	129	anti-parallel
Strand 3	b	101	106	anti-parallel
Strand 4	b	109	112	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	130	131	first strand
Strand 2	c	122	127	anti-parallel
Strand 3	c	101	105	anti-parallel
Strand 4	c	49	57	anti-parallel
Strand 5	c	71	76	anti-parallel
Strand 6	c	82	86	anti-parallel
Strand 7	c	122	127	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	8	15	first strand
Strand 2	d	20	27	anti-parallel
Strand 3	d	69	76	anti-parallel
Strand 4	d	55	62	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	44	47	first strand
Strand 2	f	32	36	anti-parallel
Strand 3	f	78	81	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	64	65	first strand
Strand 2	f	72	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C83

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C83