Analysis of interatomic Contacts of Structural Units in PDB entry:
8C89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C89 entry

There are 3 chains in PDB entry 8C89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLU 324LEU 533
H
 GLN 1CYS 226
L
 GLU 1CYS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8C89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
338 343Right-handed alpha
Helix 2
AA2
C
385 389Right-handed 310
Helix 3
AA3
C
403 410Right-handed 310
Helix 4
AA4
C
417 422Right-handed alpha
Helix 5
AA5
H
87 91Right-handed 310
Helix 6
AA6
H
137 143Right-handed 310
Helix 7
AA7
H
197 199Right-handed 310
Helix 8
AA8
L
80 84Right-handed 310
Helix 9
AA9
L
123 129Right-handed alpha
Helix 10
AB1
L
185 191Right-handed alpha
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There are 14 sheets in PDB entry 8C89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
356 357first strand
Strand 2
C
396 402anti-parallel
Strand 3
C
508 514anti-parallel
Strand 4
C
432 437anti-parallel
Strand 5
C
375 379anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
361 362first strand
Strand 2
C
524 525parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
452 454first strand
Strand 2
C
492 494anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
22 23anti-parallel
Strand 3
H
78 79anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
117 120parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
51 52anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 47first strand
Strand 2
H
33 39anti-parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
112 113anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
18 19first strand
Strand 2
H
82 83anti-parallel
Strand 3
H
68 69anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
130 134first strand
Strand 2
H
145 155anti-parallel
Strand 3
H
186 195anti-parallel
Strand 4
H
173 175anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
161 164first strand
Strand 2
H
205 210anti-parallel
Strand 3
H
215 220anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
106 108parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 22first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
67 68anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
46 47first strand
Strand 2
L
34 39anti-parallel
Strand 3
L
86 91anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
118 120first strand
Strand 2
L
131 141anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
162 166anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
155 157first strand
Strand 2
L
147 152anti-parallel
Strand 3
L
193 200anti-parallel
Strand 4
L
203 212anti-parallel
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