Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C8G entry

There are 2 chains in PDB entry 8C8G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	GLU 1336
B	LEU 5	VAL 1199

There are 54 helices in PDB entry 8C8G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	100	122	Right-handed alpha
Helix 3	AA3	A	126	138	Right-handed alpha
Helix 4	AA4	A	243	261	Right-handed alpha
Helix 5	AA5	A	273	275	Right-handed 310
Helix 6	AA6	A	294	300	Right-handed alpha
Helix 7	AA7	A	312	326	Right-handed alpha
Helix 8	AA8	A	331	335	Right-handed 310
Helix 9	AA9	A	339	344	Right-handed alpha
Helix 10	AB1	A	356	367	Right-handed alpha
Helix 11	AB2	A	373	376	Right-handed 310
Helix 12	AB3	A	385	391	Right-handed alpha
Helix 13	AB4	A	392	394	Right-handed 310
Helix 14	AB5	A	396	404	Right-handed alpha
Helix 15	AB6	A	410	414	Right-handed 310
Helix 16	AB7	A	479	483	Right-handed 310
Helix 17	AB8	A	566	574	Right-handed alpha
Helix 18	AB9	A	591	596	Right-handed alpha
Helix 19	AC1	A	610	615	Right-handed alpha
Helix 20	AC2	A	622	639	Right-handed alpha
Helix 21	AC3	A	659	666	Right-handed 310
Helix 22	AC4	A	671	676	Right-handed alpha
Helix 23	AC5	A	716	750	Right-handed alpha
Helix 24	AC6	A	750	781	Right-handed alpha
Helix 25	AC7	A	789	801	Right-handed alpha
Helix 26	AC8	A	803	830	Right-handed alpha
Helix 27	AC9	A	830	861	Right-handed alpha
Helix 28	AD1	A	864	879	Right-handed alpha
Helix 29	AD2	A	883	905	Right-handed alpha
Helix 30	AD3	A	1121	1133	Right-handed alpha
Helix 31	AD4	A	1285	1290	Right-handed alpha
Helix 32	AD5	B	69	88	Right-handed alpha
Helix 33	AD6	B	91	101	Right-handed alpha
Helix 34	AD7	B	152	156	Right-handed 310
Helix 35	AD8	B	183	199	Right-handed alpha
Helix 36	AD9	B	223	229	Right-handed alpha
Helix 37	AE1	B	248	260	Right-handed alpha
Helix 38	AE2	B	271	280	Right-handed alpha
Helix 39	AE3	B	283	289	Right-handed alpha
Helix 40	AE4	B	309	315	Right-handed alpha
Helix 41	AE5	B	391	397	Right-handed alpha
Helix 42	AE6	B	436	442	Right-handed alpha
Helix 43	AE7	B	446	450	Right-handed 310
Helix 44	AE8	B	455	463	Right-handed alpha
Helix 45	AE9	B	470	479	Right-handed alpha
Helix 46	AF1	B	484	500	Right-handed alpha
Helix 47	AF2	B	517	528	Right-handed alpha
Helix 48	AF3	B	539	544	Right-handed alpha
Helix 49	AF4	B	559	561	Right-handed 310
Helix 50	AF5	B	562	575	Right-handed alpha
Helix 51	AF6	B	575	603	Right-handed alpha
Helix 52	AF7	B	609	650	Right-handed alpha
Helix 53	AF8	B	658	662	Right-handed 310
Helix 54	AF9	B	665	674	Right-handed alpha

There are 36 sheets in PDB entry 8C8G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	41	first strand
Strand 2	A	47	60	anti-parallel
Strand 3	A	63	66	anti-parallel
Strand 4	A	185	188	parallel
Strand 5	A	219	222	parallel
Strand 6	A	200	203	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	41	first strand
Strand 2	A	47	60	anti-parallel
Strand 3	A	543	544	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	81	82	anti-parallel
Strand 3	A	457	458	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	167	first strand
Strand 2	A	174	182	anti-parallel
Strand 3	A	531	532	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	423	425	anti-parallel
Strand 4	A	451	452	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	282	first strand
Strand 2	A	288	293	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	378	379	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	477	first strand
Strand 2	A	462	467	anti-parallel
Strand 3	A	559	562	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	589	first strand
Strand 2	A	602	603	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	645	first strand
Strand 2	A	657	658	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	924	first strand
Strand 2	A	934	935	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	941	944	first strand
Strand 2	A	972	977	anti-parallel
Strand 3	A	1097	1102	anti-parallel
Strand 4	A	1010	1017	anti-parallel
Strand 5	A	1023	1031	anti-parallel
Strand 6	A	1036	1040	anti-parallel
Strand 7	A	1050	1051	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	952	953	first strand
Strand 2	A	958	962	anti-parallel
Strand 3	A	1108	1116	anti-parallel
Strand 4	A	992	999	anti-parallel
Strand 5	A	1060	1067	anti-parallel
Strand 6	A	1072	1076	anti-parallel
Strand 7	A	1079	1084	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1220	1223	first strand
Strand 2	A	1198	1202	anti-parallel
Strand 3	A	1151	1154	anti-parallel
Strand 4	A	1326	1329	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1160	1161	first strand
Strand 2	A	1174	1175	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1179	1180	first strand
Strand 2	A	1189	1190	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1229	1235	first strand
Strand 2	A	1243	1249	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1259	1261	first strand
Strand 2	A	1273	1275	anti-parallel
Strand 3	A	1295	1297	anti-parallel
Strand 4	A	1306	1308	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1278	1279	first strand
Strand 2	A	1282	1283	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	130	first strand
Strand 2	B	115	119	anti-parallel
Strand 3	B	7	12	anti-parallel
Strand 4	B	23	31	anti-parallel
Strand 5	B	34	36	anti-parallel
Strand 6	B	133	135	parallel
Strand 7	B	162	165	parallel
Strand 8	B	146	149	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	181	first strand
Strand 2	B	170	174	anti-parallel
Strand 3	B	319	321	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	212	first strand
Strand 2	B	218	222	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	B	428	429	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	466	467	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	503	first strand
Strand 2	B	515	516	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	694	first strand
Strand 2	B	700	704	anti-parallel
Strand 3	B	707	712	anti-parallel
Strand 4	B	735	740	anti-parallel
Strand 5	B	837	842	anti-parallel
Strand 6	B	764	767	anti-parallel
Strand 7	B	770	775	anti-parallel
Strand 8	B	778	783	anti-parallel
Strand 9	B	789	792	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	718	first strand
Strand 2	B	727	730	anti-parallel
Strand 3	B	848	858	anti-parallel
Strand 4	B	748	756	anti-parallel
Strand 5	B	799	806	anti-parallel
Strand 6	B	810	815	anti-parallel
Strand 7	B	820	826	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	943	947	first strand
Strand 2	B	925	929	anti-parallel
Strand 3	B	887	894	anti-parallel
Strand 4	B	1038	1041	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	902	905	first strand
Strand 2	B	912	915	anti-parallel
Strand 3	B	1008	1015	anti-parallel
Strand 4	B	997	1003	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	955	959	first strand
Strand 2	B	962	966	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	988	992	first strand
Strand 2	B	975	980	anti-parallel
Strand 3	B	1027	1028	parallel
Strand 4	B	1021	1022	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1047	1050	first strand
Strand 2	B	1067	1071	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1055	1056	first strand
Strand 2	B	1120	1121	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1085	1088	first strand
Strand 2	B	1099	1106	anti-parallel
Strand 3	B	1111	1118	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1126	1128	first strand
Strand 2	B	1148	1150	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1132	1133	first strand
Strand 2	B	1190	1198	parallel
Strand 3	B	1177	1185	anti-parallel
Strand 4	B	1164	1167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C8G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8G