Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C8I entry

There are 6 chains in PDB entry 8C8I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 24	ASP 150
B	MET 24	THR 151
C	MET 24	ASP 150
D	MET 7	SER 153
E	ALA 8	SER 153
F	ALA 8	SER 153

There are 36 helices in PDB entry 8C8I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	93	Right-handed alpha
Helix 2	AA2	B	85	93	Right-handed alpha
Helix 3	AA3	C	85	93	Right-handed alpha
Helix 4	AA4	D	12	25	Right-handed alpha
Helix 5	AA5	D	28	37	Right-handed alpha
Helix 6	AA6	D	39	48	Right-handed alpha
Helix 7	AA7	D	56	66	Right-handed alpha
Helix 8	AA8	D	68	83	Right-handed alpha
Helix 9	AA9	D	85	90	Right-handed alpha
Helix 10	AB1	D	90	108	Right-handed alpha
Helix 11	AB2	D	108	113	Right-handed alpha
Helix 12	AB3	D	117	132	Right-handed alpha
Helix 13	AB4	D	135	139	Right-handed 310
Helix 14	AB5	D	140	152	Right-handed alpha
Helix 15	AB6	E	12	25	Right-handed alpha
Helix 16	AB7	E	28	37	Right-handed alpha
Helix 17	AB8	E	39	48	Right-handed alpha
Helix 18	AB9	E	56	66	Right-handed alpha
Helix 19	AC1	E	68	83	Right-handed alpha
Helix 20	AC2	E	85	90	Right-handed alpha
Helix 21	AC3	E	90	108	Right-handed alpha
Helix 22	AC4	E	108	113	Right-handed alpha
Helix 23	AC5	E	117	132	Right-handed alpha
Helix 24	AC6	E	135	139	Right-handed 310
Helix 25	AC7	E	140	152	Right-handed alpha
Helix 26	AC8	F	12	25	Right-handed alpha
Helix 27	AC9	F	28	37	Right-handed alpha
Helix 28	AD1	F	39	48	Right-handed alpha
Helix 29	AD2	F	56	66	Right-handed alpha
Helix 30	AD3	F	68	83	Right-handed alpha
Helix 31	AD4	F	85	90	Right-handed alpha
Helix 32	AD5	F	90	108	Right-handed alpha
Helix 33	AD6	F	108	113	Right-handed alpha
Helix 34	AD7	F	117	132	Right-handed alpha
Helix 35	AD8	F	135	139	Right-handed 310
Helix 36	AD9	F	140	152	Right-handed alpha

There are 12 sheets in PDB entry 8C8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	26	30	anti-parallel
Strand 3	B	142	144	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	128	136	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	100	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	121	123	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	67	first strand
Strand 2	A	110	115	anti-parallel
Strand 3	A	94	97	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	C	25	30	parallel
Strand 3	C	70	73	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	25	30	anti-parallel
Strand 3	C	141	145	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	128	136	anti-parallel
Strand 3	C	128	138	anti-parallel
Strand 4	C	48	51	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	128	136	anti-parallel
Strand 4	C	128	138	anti-parallel
Strand 5	C	78	83	anti-parallel
Strand 6	C	100	101	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	121	123	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	67	first strand
Strand 2	B	110	115	anti-parallel
Strand 3	B	94	97	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	121	123	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	67	first strand
Strand 2	C	110	115	anti-parallel
Strand 3	C	94	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C8I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8I