Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C8J entry

There are 4 chains in PDB entry 8C8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 251GLY 660
A
 PRO 662HIS 1062
B
 G 3 C 11
C
 U 1 C 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8C8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
254 259Right-handed alpha
Helix 2
AA2
A
259 277Right-handed alpha
Helix 3
AA3
A
283 304Right-handed alpha
Helix 4
AA4
A
403 419Right-handed alpha
Helix 5
AA5
A
425 436Right-handed alpha
Helix 6
AA6
A
442 451Right-handed alpha
Helix 7
AA7
A
454 464Right-handed alpha
Helix 8
AA8
A
477 484Right-handed alpha
Helix 9
AA9
A
484 503Right-handed alpha
Helix 10
AB1
A
506 510Right-handed 310
Helix 11
AB2
A
526 528Right-handed 310
Helix 12
AB3
A
537 553Right-handed alpha
Helix 13
AB4
A
554 559Right-handed alpha
Helix 14
AB5
A
572 589Right-handed alpha
Helix 15
AB6
A
603 608Right-handed alpha
Helix 16
AB7
A
609 620Right-handed alpha
Helix 17
AB8
A
623 634Right-handed alpha
Helix 18
AB9
A
663 682Right-handed alpha
Helix 19
AC1
A
710 730Right-handed alpha
Helix 20
AC2
A
746 755Right-handed alpha
Helix 21
AC3
A
776 778Right-handed 310
Helix 22
AC4
A
779 798Right-handed alpha
Helix 23
AC5
A
805 828Right-handed alpha
Helix 24
AC6
A
833 850Right-handed alpha
Helix 25
AC7
A
874 893Right-handed alpha
Helix 26
AC8
A
897 902Right-handed 310
Helix 27
AC9
A
932 947Right-handed alpha
Helix 28
AD1
A
961 966Right-handed alpha
Helix 29
AD2
A
970 982Right-handed alpha
Helix 30
AD3
A
984 989Right-handed alpha
Helix 31
AD4
A
990 994Right-handed 310
Helix 32
AD5
A
998 1005Right-handed alpha
Helix 33
AD6
A
1006 1008Right-handed 310
Helix 34
AD7
A
1009 1022Right-handed alpha
Helix 35
AD8
A
1022 1030Right-handed alpha
Helix 36
AD9
A
1034 1042Right-handed alpha
Helix 37
AE1
A
1048 1062Right-handed alpha
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There are 6 sheets in PDB entry 8C8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
400 401anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 536first strand
Strand 2
A
512 518anti-parallel
Strand 3
A
638 643parallel
Strand 4
A
646 647anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 536first strand
Strand 2
A
512 518anti-parallel
Strand 3
A
638 643parallel
Strand 4
A
651 652anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 700first strand
Strand 2
A
703 709anti-parallel
Strand 3
A
594 599anti-parallel
Strand 4
A
739 743anti-parallel
Strand 5
A
760 761parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 690first strand
Strand 2
A
693 695anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 768first strand
Strand 2
A
771 774anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il