Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C8K entry

There are 6 chains in PDB entry 8C8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1364	THR 1616
B	ASN 1364	THR 1616
C	ASN 1364	THR 1616
D	ASN 1364	THR 1616
E	ASN 1364	THR 1616
F	ASN 1364	THR 1616

There are 12 helices in PDB entry 8C8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1389	1392	Right-handed 310
Helix 2	AA2	A	1523	1526	Right-handed 310
Helix 3	AA3	B	1389	1392	Right-handed 310
Helix 4	AA4	B	1523	1526	Right-handed 310
Helix 5	AA5	C	1389	1392	Right-handed 310
Helix 6	AA6	C	1523	1526	Right-handed 310
Helix 7	AA7	D	1389	1392	Right-handed 310
Helix 8	AA8	D	1523	1526	Right-handed 310
Helix 9	AA9	E	1389	1392	Right-handed 310
Helix 10	AB1	E	1523	1526	Right-handed 310
Helix 11	AB2	F	1389	1392	Right-handed 310
Helix 12	AB3	F	1523	1526	Right-handed 310

There are 30 sheets in PDB entry 8C8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1368	1371	first strand
Strand 2	A	1381	1387	anti-parallel
Strand 3	A	1432	1439	anti-parallel
Strand 4	A	1423	1425	anti-parallel
Strand 5	A	1400	1401	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1368	1371	first strand
Strand 2	A	1381	1387	anti-parallel
Strand 3	A	1432	1439	anti-parallel
Strand 4	A	1468	1470	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1375	1376	first strand
Strand 2	A	1488	1496	parallel
Strand 3	A	1476	1485	anti-parallel
Strand 4	A	1409	1413	anti-parallel
Strand 5	A	1416	1419	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1502	1505	first strand
Strand 2	A	1515	1521	anti-parallel
Strand 3	A	1561	1569	anti-parallel
Strand 4	A	1548	1554	anti-parallel
Strand 5	A	1534	1541	anti-parallel
Strand 6	A	1585	1593	anti-parallel
Strand 7	A	1606	1614	anti-parallel
Strand 8	A	1509	1510	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1502	1505	first strand
Strand 2	A	1515	1521	anti-parallel
Strand 3	A	1561	1569	anti-parallel
Strand 4	A	1578	1580	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1368	1371	first strand
Strand 2	B	1381	1387	anti-parallel
Strand 3	B	1432	1439	anti-parallel
Strand 4	B	1423	1425	anti-parallel
Strand 5	B	1400	1401	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1368	1371	first strand
Strand 2	B	1381	1387	anti-parallel
Strand 3	B	1432	1439	anti-parallel
Strand 4	B	1468	1470	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1375	1376	first strand
Strand 2	B	1488	1496	parallel
Strand 3	B	1476	1485	anti-parallel
Strand 4	B	1409	1413	anti-parallel
Strand 5	B	1416	1419	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1502	1505	first strand
Strand 2	B	1515	1521	anti-parallel
Strand 3	B	1561	1569	anti-parallel
Strand 4	B	1548	1554	anti-parallel
Strand 5	B	1534	1541	anti-parallel
Strand 6	B	1585	1593	anti-parallel
Strand 7	B	1606	1614	anti-parallel
Strand 8	B	1509	1510	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1502	1505	first strand
Strand 2	B	1515	1521	anti-parallel
Strand 3	B	1561	1569	anti-parallel
Strand 4	B	1578	1580	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1368	1371	first strand
Strand 2	C	1381	1387	anti-parallel
Strand 3	C	1432	1439	anti-parallel
Strand 4	C	1423	1425	anti-parallel
Strand 5	C	1400	1401	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1368	1371	first strand
Strand 2	C	1381	1387	anti-parallel
Strand 3	C	1432	1439	anti-parallel
Strand 4	C	1468	1470	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1375	1376	first strand
Strand 2	C	1488	1496	parallel
Strand 3	C	1476	1485	anti-parallel
Strand 4	C	1409	1413	anti-parallel
Strand 5	C	1416	1419	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1502	1505	first strand
Strand 2	C	1515	1521	anti-parallel
Strand 3	C	1561	1569	anti-parallel
Strand 4	C	1548	1554	anti-parallel
Strand 5	C	1534	1541	anti-parallel
Strand 6	C	1585	1593	anti-parallel
Strand 7	C	1606	1614	anti-parallel
Strand 8	C	1509	1510	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1502	1505	first strand
Strand 2	C	1515	1521	anti-parallel
Strand 3	C	1561	1569	anti-parallel
Strand 4	C	1578	1580	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1368	1371	first strand
Strand 2	D	1381	1387	anti-parallel
Strand 3	D	1432	1439	anti-parallel
Strand 4	D	1423	1425	anti-parallel
Strand 5	D	1400	1401	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1368	1371	first strand
Strand 2	D	1381	1387	anti-parallel
Strand 3	D	1432	1439	anti-parallel
Strand 4	D	1468	1470	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1375	1376	first strand
Strand 2	D	1488	1496	parallel
Strand 3	D	1476	1485	anti-parallel
Strand 4	D	1409	1413	anti-parallel
Strand 5	D	1416	1419	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1502	1505	first strand
Strand 2	D	1515	1521	anti-parallel
Strand 3	D	1561	1569	anti-parallel
Strand 4	D	1548	1554	anti-parallel
Strand 5	D	1534	1541	anti-parallel
Strand 6	D	1585	1593	anti-parallel
Strand 7	D	1606	1614	anti-parallel
Strand 8	D	1509	1510	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1502	1505	first strand
Strand 2	D	1515	1521	anti-parallel
Strand 3	D	1561	1569	anti-parallel
Strand 4	D	1578	1580	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1368	1371	first strand
Strand 2	E	1381	1387	anti-parallel
Strand 3	E	1432	1439	anti-parallel
Strand 4	E	1423	1425	anti-parallel
Strand 5	E	1400	1401	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1368	1371	first strand
Strand 2	E	1381	1387	anti-parallel
Strand 3	E	1432	1439	anti-parallel
Strand 4	E	1468	1470	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1375	1376	first strand
Strand 2	E	1488	1496	parallel
Strand 3	E	1476	1485	anti-parallel
Strand 4	E	1409	1413	anti-parallel
Strand 5	E	1416	1419	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1502	1505	first strand
Strand 2	E	1515	1521	anti-parallel
Strand 3	E	1561	1569	anti-parallel
Strand 4	E	1548	1554	anti-parallel
Strand 5	E	1534	1541	anti-parallel
Strand 6	E	1585	1593	anti-parallel
Strand 7	E	1606	1614	anti-parallel
Strand 8	E	1509	1510	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1502	1505	first strand
Strand 2	E	1515	1521	anti-parallel
Strand 3	E	1561	1569	anti-parallel
Strand 4	E	1578	1580	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1368	1371	first strand
Strand 2	F	1381	1387	anti-parallel
Strand 3	F	1432	1439	anti-parallel
Strand 4	F	1423	1425	anti-parallel
Strand 5	F	1400	1401	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1368	1371	first strand
Strand 2	F	1381	1387	anti-parallel
Strand 3	F	1432	1439	anti-parallel
Strand 4	F	1468	1470	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1375	1376	first strand
Strand 2	F	1488	1496	parallel
Strand 3	F	1476	1485	anti-parallel
Strand 4	F	1409	1413	anti-parallel
Strand 5	F	1416	1419	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1502	1505	first strand
Strand 2	F	1515	1521	anti-parallel
Strand 3	F	1561	1569	anti-parallel
Strand 4	F	1548	1554	anti-parallel
Strand 5	F	1534	1541	anti-parallel
Strand 6	F	1585	1593	anti-parallel
Strand 7	F	1606	1614	anti-parallel
Strand 8	F	1509	1510	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1502	1505	first strand
Strand 2	F	1515	1521	anti-parallel
Strand 3	F	1561	1569	anti-parallel
Strand 4	F	1578	1580	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8K