Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C8M entry

There are 6 chains in PDB entry 8C8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 37THR 1616
B
 ALA 37THR 1616
C
 ALA 37THR 1616
D
 ALA 37THR 1616
E
 ALA 37THR 1616
F
 ALA 37THR 1616
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are204 helices in PDB entry 8C8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 113Right-handed alpha
Helix 2
AA2
A
129 131Right-handed 310
Helix 3
AA3
A
132 137Right-handed alpha
Helix 4
AA4
A
178 185Right-handed alpha
Helix 5
AA5
A
259 263Right-handed 310
Helix 6
AA6
A
285 288Right-handed 310
Helix 7
AA7
A
384 386Right-handed 310
Helix 8
AA8
A
393 398Right-handed alpha
Helix 9
AA9
A
481 484Right-handed 310
Helix 10
AB1
A
533 538Right-handed alpha
Helix 11
AB2
A
543 547Right-handed alpha
Helix 12
AB3
A
560 564Right-handed 310
Helix 13
AB4
A
605 610Right-handed alpha
Helix 14
AB5
A
630 633Right-handed 310
Helix 15
AB6
A
681 689Right-handed alpha
Helix 16
AB7
A
733 735Right-handed 310
Helix 17
AB8
A
769 772Right-handed 310
Helix 18
AB9
A
773 779Right-handed alpha
Helix 19
AC1
A
796 800Right-handed 310
Helix 20
AC2
A
850 853Right-handed 310
Helix 21
AC3
A
919 926Right-handed alpha
Helix 22
AC4
A
933 937Right-handed 310
Helix 23
AC5
A
1029 1033Right-handed 310
Helix 24
AC6
A
1050 1054Right-handed 310
Helix 25
AC7
A
1059 1063Right-handed 310
Helix 26
AC8
A
1077 1081Right-handed 310
Helix 27
AC9
A
1129 1133Right-handed 310
Helix 28
AD1
A
1164 1169Right-handed 310
Helix 29
AD2
A
1183 1188Right-handed alpha
Helix 30
AD3
A
1256 1259Right-handed 310
Helix 31
AD4
A
1269 1271Right-handed 310
Helix 32
AD5
A
1291 1297Right-handed alpha
Helix 33
AD6
A
1389 1392Right-handed 310
Helix 34
AD7
A
1523 1526Right-handed 310
Helix 35
AD8
B
105 113Right-handed alpha
Helix 36
AD9
B
129 131Right-handed 310
Helix 37
AE1
B
132 137Right-handed alpha
Helix 38
AE2
B
178 185Right-handed alpha
Helix 39
AE3
B
259 263Right-handed 310
Helix 40
AE4
B
285 288Right-handed 310
Helix 41
AE5
B
384 386Right-handed 310
Helix 42
AE6
B
393 398Right-handed alpha
Helix 43
AE7
B
481 484Right-handed 310
Helix 44
AE8
B
533 538Right-handed alpha
Helix 45
AE9
B
543 547Right-handed alpha
Helix 46
AF1
B
560 564Right-handed 310
Helix 47
AF2
B
605 610Right-handed alpha
Helix 48
AF3
B
630 633Right-handed 310
Helix 49
AF4
B
681 689Right-handed alpha
Helix 50
AF5
B
733 735Right-handed 310
Helix 51
AF6
B
769 772Right-handed 310
Helix 52
AF7
B
773 779Right-handed alpha
Helix 53
AF8
B
796 800Right-handed 310
Helix 54
AF9
B
850 853Right-handed 310
Helix 55
AG1
B
919 926Right-handed alpha
Helix 56
AG2
B
933 937Right-handed 310
Helix 57
AG3
B
1029 1033Right-handed 310
Helix 58
AG4
B
1050 1054Right-handed 310
Helix 59
AG5
B
1059 1063Right-handed 310
Helix 60
AG6
B
1077 1081Right-handed 310
Helix 61
AG7
B
1129 1133Right-handed 310
Helix 62
AG8
B
1164 1169Right-handed 310
Helix 63
AG9
B
1183 1188Right-handed alpha
Helix 64
AH1
B
1256 1259Right-handed 310
Helix 65
AH2
B
1269 1271Right-handed 310
Helix 66
AH3
B
1291 1297Right-handed alpha
Helix 67
AH4
B
1389 1392Right-handed 310
Helix 68
AH5
B
1523 1526Right-handed 310
Helix 69
AH6
C
105 113Right-handed alpha
Helix 70
AH7
C
129 131Right-handed 310
Helix 71
AH8
C
132 137Right-handed alpha
Helix 72
AH9
C
178 185Right-handed alpha
Helix 73
AI1
C
259 263Right-handed 310
Helix 74
AI2
C
285 288Right-handed 310
Helix 75
AI3
C
384 386Right-handed 310
Helix 76
AI4
C
393 398Right-handed alpha
Helix 77
AI5
C
481 484Right-handed 310
Helix 78
AI6
C
533 538Right-handed alpha
Helix 79
AI7
C
543 547Right-handed alpha
Helix 80
AI8
C
560 564Right-handed 310
Helix 81
AI9
C
605 610Right-handed alpha
Helix 82
AJ1
C
630 633Right-handed 310
Helix 83
AJ2
C
681 689Right-handed alpha
Helix 84
AJ3
C
733 735Right-handed 310
Helix 85
AJ4
C
769 772Right-handed 310
Helix 86
AJ5
C
773 779Right-handed alpha
Helix 87
AJ6
C
796 800Right-handed 310
Helix 88
AJ7
C
850 853Right-handed 310
Helix 89
AJ8
C
919 926Right-handed alpha
Helix 90
AJ9
C
933 937Right-handed 310
Helix 91
AK1
C
1029 1033Right-handed 310
Helix 92
AK2
C
1050 1054Right-handed 310
Helix 93
AK3
C
1059 1063Right-handed 310
Helix 94
AK4
C
1077 1081Right-handed 310
Helix 95
AK5
C
1129 1133Right-handed 310
Helix 96
AK6
C
1164 1169Right-handed 310
Helix 97
AK7
C
1183 1188Right-handed alpha
Helix 98
AK8
C
1256 1259Right-handed 310
Helix 99
AK9
C
1269 1271Right-handed 310
Helix 100
AL1
C
1291 1297Right-handed alpha
Helix 101
AL2
C
1389 1392Right-handed 310
Helix 102
AL3
C
1523 1526Right-handed 310
Helix 103
AL4
D
105 113Right-handed alpha
Helix 104
AL5
D
129 131Right-handed 310
Helix 105
AL6
D
132 137Right-handed alpha
Helix 106
AL7
D
178 185Right-handed alpha
Helix 107
AL8
D
259 263Right-handed 310
Helix 108
AL9
D
285 288Right-handed 310
Helix 109
AM1
D
384 386Right-handed 310
Helix 110
AM2
D
393 398Right-handed alpha
Helix 111
AM3
D
481 484Right-handed 310
Helix 112
AM4
D
533 538Right-handed alpha
Helix 113
AM5
D
543 547Right-handed alpha
Helix 114
AM6
D
560 564Right-handed 310
Helix 115
AM7
D
605 610Right-handed alpha
Helix 116
AM8
D
630 633Right-handed 310
Helix 117
AM9
D
681 689Right-handed alpha
Helix 118
AN1
D
733 735Right-handed 310
Helix 119
AN2
D
769 772Right-handed 310
Helix 120
AN3
D
773 779Right-handed alpha
Helix 121
AN4
D
796 800Right-handed 310
Helix 122
AN5
D
850 853Right-handed 310
Helix 123
AN6
D
919 926Right-handed alpha
Helix 124
AN7
D
933 937Right-handed 310
Helix 125
AN8
D
1029 1033Right-handed 310
Helix 126
AN9
D
1050 1054Right-handed 310
Helix 127
AO1
D
1059 1063Right-handed 310
Helix 128
AO2
D
1077 1081Right-handed 310
Helix 129
AO3
D
1129 1133Right-handed 310
Helix 130
AO4
D
1164 1169Right-handed 310
Helix 131
AO5
D
1183 1188Right-handed alpha
Helix 132
AO6
D
1256 1259Right-handed 310
Helix 133
AO7
D
1269 1271Right-handed 310
Helix 134
AO8
D
1291 1297Right-handed alpha
Helix 135
AO9
D
1389 1392Right-handed 310
Helix 136
AP1
D
1523 1526Right-handed 310
Helix 137
AP2
E
105 113Right-handed alpha
Helix 138
AP3
E
129 131Right-handed 310
Helix 139
AP4
E
132 137Right-handed alpha
Helix 140
AP5
E
178 185Right-handed alpha
Helix 141
AP6
E
259 263Right-handed 310
Helix 142
AP7
E
285 288Right-handed 310
Helix 143
AP8
E
384 386Right-handed 310
Helix 144
AP9
E
393 398Right-handed alpha
Helix 145
AQ1
E
481 484Right-handed 310
Helix 146
AQ2
E
533 538Right-handed alpha
Helix 147
AQ3
E
543 547Right-handed alpha
Helix 148
AQ4
E
560 564Right-handed 310
Helix 149
AQ5
E
605 610Right-handed alpha
Helix 150
AQ6
E
630 633Right-handed 310
Helix 151
AQ7
E
681 689Right-handed alpha
Helix 152
AQ8
E
733 735Right-handed 310
Helix 153
AQ9
E
769 772Right-handed 310
Helix 154
AR1
E
773 779Right-handed alpha
Helix 155
AR2
E
796 800Right-handed 310
Helix 156
AR3
E
850 853Right-handed 310
Helix 157
AR4
E
919 926Right-handed alpha
Helix 158
AR5
E
933 937Right-handed 310
Helix 159
AR6
E
1029 1033Right-handed 310
Helix 160
AR7
E
1050 1054Right-handed 310
Helix 161
AR8
E
1059 1063Right-handed 310
Helix 162
AR9
E
1077 1081Right-handed 310
Helix 163
AS1
E
1129 1133Right-handed 310
Helix 164
AS2
E
1164 1169Right-handed 310
Helix 165
AS3
E
1183 1188Right-handed alpha
Helix 166
AS4
E
1256 1259Right-handed 310
Helix 167
AS5
E
1269 1271Right-handed 310
Helix 168
AS6
E
1291 1297Right-handed alpha
Helix 169
AS7
E
1389 1392Right-handed 310
Helix 170
AS8
E
1523 1526Right-handed 310
Helix 171
AS9
F
105 113Right-handed alpha
Helix 172
AT1
F
129 131Right-handed 310
Helix 173
AT2
F
132 137Right-handed alpha
Helix 174
AT3
F
178 185Right-handed alpha
Helix 175
AT4
F
259 263Right-handed 310
Helix 176
AT5
F
285 288Right-handed 310
Helix 177
AT6
F
384 386Right-handed 310
Helix 178
AT7
F
393 398Right-handed alpha
Helix 179
AT8
F
481 484Right-handed 310
Helix 180
AT9
F
533 538Right-handed alpha
Helix 181
AU1
F
543 547Right-handed alpha
Helix 182
AU2
F
560 564Right-handed 310
Helix 183
AU3
F
605 610Right-handed alpha
Helix 184
AU4
F
630 633Right-handed 310
Helix 185
AU5
F
681 689Right-handed alpha
Helix 186
AU6
F
733 735Right-handed 310
Helix 187
AU7
F
769 772Right-handed 310
Helix 188
AU8
F
773 779Right-handed alpha
Helix 189
AU9
F
796 800Right-handed 310
Helix 190
AV1
F
850 853Right-handed 310
Helix 191
AV2
F
919 926Right-handed alpha
Helix 192
AV3
F
933 937Right-handed 310
Helix 193
AV4
F
1029 1033Right-handed 310
Helix 194
AV5
F
1050 1054Right-handed 310
Helix 195
AV6
F
1059 1063Right-handed 310
Helix 196
AV7
F
1077 1081Right-handed 310
Helix 197
AV8
F
1129 1133Right-handed 310
Helix 198
AV9
F
1164 1169Right-handed 310
Helix 199
AW1
F
1183 1188Right-handed alpha
Helix 200
AW2
F
1256 1259Right-handed 310
Helix 201
AW3
F
1269 1271Right-handed 310
Helix 202
AW4
F
1291 1297Right-handed alpha
Helix 203
AW5
F
1389 1392Right-handed 310
Helix 204
AW6
F
1523 1526Right-handed 310
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