Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C8N entry

There are 6 chains in PDB entry 8C8N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 37	PHE 454
B	ALA 37	PHE 454
C	ALA 37	PHE 454
D	ALA 37	PHE 454
E	ALA 37	PHE 454
F	ALA 37	PHE 454

There are 45 helices in PDB entry 8C8N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	51	Right-handed 310
Helix 2	AA2	A	105	115	Right-handed alpha
Helix 3	AA3	A	129	131	Right-handed 310
Helix 4	AA4	A	132	137	Right-handed alpha
Helix 5	AA5	A	178	184	Right-handed alpha
Helix 6	AA6	A	384	386	Right-handed 310
Helix 7	AA7	A	390	392	Right-handed 310
Helix 8	AA8	A	393	398	Right-handed alpha
Helix 9	AA9	B	105	115	Right-handed alpha
Helix 10	AB1	B	129	133	Right-handed 310
Helix 11	AB2	B	178	184	Right-handed alpha
Helix 12	AB3	B	259	263	Right-handed 310
Helix 13	AB4	B	384	386	Right-handed 310
Helix 14	AB5	B	390	392	Right-handed 310
Helix 15	AB6	B	393	398	Right-handed alpha
Helix 16	AB7	C	66	70	Right-handed 310
Helix 17	AB8	C	105	113	Right-handed alpha
Helix 18	AB9	C	129	131	Right-handed 310
Helix 19	AC1	C	132	137	Right-handed alpha
Helix 20	AC2	C	178	184	Right-handed alpha
Helix 21	AC3	C	335	340	Right-handed 310
Helix 22	AC4	C	384	386	Right-handed 310
Helix 23	AC5	C	393	398	Right-handed alpha
Helix 24	AC6	D	47	51	Right-handed 310
Helix 25	AC7	D	105	115	Right-handed alpha
Helix 26	AC8	D	129	131	Right-handed 310
Helix 27	AC9	D	132	137	Right-handed alpha
Helix 28	AD1	D	178	184	Right-handed alpha
Helix 29	AD2	D	384	386	Right-handed 310
Helix 30	AD3	D	390	392	Right-handed 310
Helix 31	AD4	D	393	398	Right-handed alpha
Helix 32	AD5	E	105	115	Right-handed alpha
Helix 33	AD6	E	129	133	Right-handed 310
Helix 34	AD7	E	178	184	Right-handed alpha
Helix 35	AD8	E	259	263	Right-handed 310
Helix 36	AD9	E	384	386	Right-handed 310
Helix 37	AE1	E	393	398	Right-handed alpha
Helix 38	AE2	F	66	70	Right-handed 310
Helix 39	AE3	F	105	113	Right-handed alpha
Helix 40	AE4	F	129	131	Right-handed 310
Helix 41	AE5	F	132	137	Right-handed alpha
Helix 42	AE6	F	178	184	Right-handed alpha
Helix 43	AE7	F	335	340	Right-handed 310
Helix 44	AE8	F	384	386	Right-handed 310
Helix 45	AE9	F	393	398	Right-handed alpha

There are 42 sheets in PDB entry 8C8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	60	64	anti-parallel
Strand 3	A	98	104	anti-parallel
Strand 4	A	91	92	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	60	64	anti-parallel
Strand 3	A	98	104	anti-parallel
Strand 4	A	228	231	parallel
Strand 5	A	146	149	anti-parallel
Strand 6	A	126	128	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	250	256	parallel
Strand 3	A	238	244	anti-parallel
Strand 4	A	80	83	anti-parallel
Strand 5	A	86	87	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	267	first strand
Strand 2	A	280	283	anti-parallel
Strand 3	A	415	417	anti-parallel
Strand 4	A	405	408	anti-parallel
Strand 5	A	296	299	anti-parallel
Strand 6	A	314	316	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	446	452	parallel
Strand 3	A	439	443	anti-parallel
Strand 4	A	347	350	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	427	429	anti-parallel
Strand 3	A	361	363	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	388	389	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	98	104	anti-parallel
Strand 4	B	91	92	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	98	104	anti-parallel
Strand 4	B	228	231	parallel
Strand 5	B	147	149	anti-parallel
Strand 6	B	126	128	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	248	256	parallel
Strand 3	B	237	245	anti-parallel
Strand 4	B	80	83	anti-parallel
Strand 5	B	86	87	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	267	first strand
Strand 2	B	280	283	anti-parallel
Strand 3	B	415	417	anti-parallel
Strand 4	B	405	408	anti-parallel
Strand 5	B	296	299	anti-parallel
Strand 6	B	314	316	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	446	452	parallel
Strand 3	B	438	443	anti-parallel
Strand 4	B	347	350	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	278	first strand
Strand 2	B	427	429	anti-parallel
Strand 3	B	361	363	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	388	389	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	60	64	anti-parallel
Strand 3	C	98	104	anti-parallel
Strand 4	C	91	92	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	60	64	anti-parallel
Strand 3	C	98	104	anti-parallel
Strand 4	C	228	231	parallel
Strand 5	C	147	149	anti-parallel
Strand 6	C	126	128	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	250	256	parallel
Strand 3	C	237	244	anti-parallel
Strand 4	C	80	83	anti-parallel
Strand 5	C	86	87	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	267	first strand
Strand 2	C	280	283	anti-parallel
Strand 3	C	415	417	anti-parallel
Strand 4	C	403	408	anti-parallel
Strand 5	C	296	300	anti-parallel
Strand 6	C	313	316	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	446	452	parallel
Strand 3	C	439	443	anti-parallel
Strand 4	C	347	350	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	427	429	anti-parallel
Strand 3	C	361	363	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	373	first strand
Strand 2	C	388	389	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	60	64	anti-parallel
Strand 3	D	98	104	anti-parallel
Strand 4	D	91	92	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	60	64	anti-parallel
Strand 3	D	98	104	anti-parallel
Strand 4	D	228	231	parallel
Strand 5	D	146	149	anti-parallel
Strand 6	D	126	128	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	250	256	parallel
Strand 3	D	238	244	anti-parallel
Strand 4	D	80	83	anti-parallel
Strand 5	D	86	87	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	267	first strand
Strand 2	D	280	283	anti-parallel
Strand 3	D	415	417	anti-parallel
Strand 4	D	405	408	anti-parallel
Strand 5	D	296	299	anti-parallel
Strand 6	D	314	316	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	278	first strand
Strand 2	D	427	429	anti-parallel
Strand 3	D	361	363	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	438	443	anti-parallel
Strand 3	D	448	451	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	373	first strand
Strand 2	D	388	389	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	60	64	anti-parallel
Strand 3	E	98	104	anti-parallel
Strand 4	E	91	92	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	60	64	anti-parallel
Strand 3	E	98	104	anti-parallel
Strand 4	E	228	231	parallel
Strand 5	E	147	149	anti-parallel
Strand 6	E	126	128	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	248	256	parallel
Strand 3	E	237	245	anti-parallel
Strand 4	E	80	83	anti-parallel
Strand 5	E	86	87	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	267	first strand
Strand 2	E	280	283	anti-parallel
Strand 3	E	415	417	anti-parallel
Strand 4	E	405	408	anti-parallel
Strand 5	E	296	299	anti-parallel
Strand 6	E	314	316	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	272	first strand
Strand 2	E	446	452	parallel
Strand 3	E	438	443	anti-parallel
Strand 4	E	347	350	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	278	first strand
Strand 2	E	427	429	anti-parallel
Strand 3	E	361	363	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	372	373	first strand
Strand 2	E	388	389	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	43	first strand
Strand 2	F	60	64	anti-parallel
Strand 3	F	98	104	anti-parallel
Strand 4	F	91	92	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	43	first strand
Strand 2	F	60	64	anti-parallel
Strand 3	F	98	104	anti-parallel
Strand 4	F	228	231	parallel
Strand 5	F	147	149	anti-parallel
Strand 6	F	126	128	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	250	256	parallel
Strand 3	F	237	244	anti-parallel
Strand 4	F	80	83	anti-parallel
Strand 5	F	86	87	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	264	267	first strand
Strand 2	F	280	283	anti-parallel
Strand 3	F	415	417	anti-parallel
Strand 4	F	403	408	anti-parallel
Strand 5	F	296	300	anti-parallel
Strand 6	F	313	316	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	277	278	first strand
Strand 2	F	427	429	anti-parallel
Strand 3	F	361	363	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	350	first strand
Strand 2	F	439	443	anti-parallel
Strand 3	F	446	450	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	372	373	first strand
Strand 2	F	388	389	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C8N

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8N