Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C8Q entry

There are 13 chains in PDB entry 8C8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ILE 538
B
 ASP 10ASN 247
C
 ASN 2SER 269
D
 VAL 39ASN 159
E
 GLY 39LYS 183
F
 HIS 40PHE 139
G
 LYS 2ALA 58
H
 SER 22LEU 66
I
 ALA 2ASN 56
J
 GLN 12ILE 86
K
 ASN 38LEU 125
L
 ASN 97ASN 165
M
 UNK 1UNK 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8C8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
17 46Right-handed alpha
Helix 3
AA3
A
58 75Right-handed alpha
Helix 4
AA4
A
76 82Right-handed alpha
Helix 5
AA5
A
83 89Right-handed alpha
Helix 6
AA6
A
89 95Right-handed alpha
Helix 7
AA7
A
101 110Right-handed alpha
Helix 8
AA8
A
111 124Right-handed alpha
Helix 9
AA9
A
137 141Right-handed 310
Helix 10
AB1
A
151 178Right-handed alpha
Helix 11
AB2
A
189 222Right-handed alpha
Helix 12
AB3
A
236 247Right-handed alpha
Helix 13
AB4
A
247 253Right-handed alpha
Helix 14
AB5
A
254 270Right-handed alpha
Helix 15
AB6
A
275 290Right-handed alpha
Helix 16
AB7
A
294 298Right-handed 310
Helix 17
AB8
A
304 317Right-handed alpha
Helix 18
AB9
A
318 334Right-handed alpha
Helix 19
AC1
A
342 365Right-handed alpha
Helix 20
AC2
A
367 372Right-handed alpha
Helix 21
AC3
A
377 392Right-handed alpha
Helix 22
AC4
A
392 409Right-handed alpha
Helix 23
AC5
A
413 433Right-handed alpha
Helix 24
AC6
A
433 441Right-handed alpha
Helix 25
AC7
A
455 484Right-handed alpha
Helix 26
AC8
A
504 510Right-handed alpha
Helix 27
AC9
A
516 520Right-handed 310
Helix 28
AD1
B
24 58Right-handed alpha
Helix 29
AD2
B
76 105Right-handed alpha
Helix 30
AD3
B
236 247Right-handed alpha
Helix 31
AD4
C
3 7Right-handed 310
Helix 32
AD5
C
20 40Right-handed alpha
Helix 33
AD6
C
46 73Right-handed alpha
Helix 34
AD7
C
80 100Right-handed alpha
Helix 35
AD8
C
100 113Right-handed alpha
Helix 36
AD9
C
115 119Right-handed 310
Helix 37
AE1
C
126 131Right-handed 310
Helix 38
AE2
C
136 161Right-handed alpha
Helix 39
AE3
C
164 191Right-handed alpha
Helix 40
AE4
C
200 232Right-handed alpha
Helix 41
AE5
C
240 264Right-handed alpha
Helix 42
AE6
D
40 48Right-handed alpha
Helix 43
AE7
D
51 55Right-handed 310
Helix 44
AE8
D
74 86Right-handed alpha
Helix 45
AE9
E
44 48Right-handed 310
Helix 46
AF1
E
50 55Right-handed alpha
Helix 47
AF2
E
59 74Right-handed alpha
Helix 48
AF3
E
77 81Right-handed 310
Helix 49
AF4
E
82 94Right-handed alpha
Helix 50
AF5
E
106 130Right-handed alpha
Helix 51
AF6
E
140 154Right-handed alpha
Helix 52
AF7
E
175 179Right-handed 310
Helix 53
AF8
F
44 57Right-handed alpha
Helix 54
AF9
F
60 72Right-handed alpha
Helix 55
AG1
F
79 94Right-handed alpha
Helix 56
AG2
F
95 110Right-handed alpha
Helix 57
AG3
F
112 123Right-handed alpha
Helix 58
AG4
F
123 131Right-handed alpha
Helix 59
AG5
F
134 139Right-handed alpha
Helix 60
AG6
G
4 12Right-handed alpha
Helix 61
AG7
G
13 15Right-handed 310
Helix 62
AG8
G
26 29Right-handed 310
Helix 63
AG9
G
30 53Right-handed alpha
Helix 64
AH1
H
39 62Right-handed alpha
Helix 65
AH2
I
9 36Right-handed alpha
Helix 66
AH3
I
36 56Right-handed alpha
Helix 67
AH4
J
29 46Right-handed alpha
Helix 68
AH5
J
51 63Right-handed alpha
Helix 69
AH6
J
69 80Right-handed alpha
Helix 70
AH7
K
39 64Right-handed alpha
Helix 71
AH8
K
64 83Right-handed alpha
Helix 72
AH9
L
99 107Right-handed alpha
Helix 73
AI1
L
108 128Right-handed alpha
Helix 74
AI2
L
134 162Right-handed alpha
Helix 75
AI3
M
9 24Right-handed alpha
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There are 5 sheets in PDB entry 8C8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
D
131 134anti-parallel
Strand 3
D
117 120anti-parallel
Strand 4
A
535 536parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 141first strand
Strand 2
B
122 126anti-parallel
Strand 3
B
112 117anti-parallel
Strand 4
B
171 175parallel
Strand 5
B
201 205anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
229 235parallel
Strand 3
B
212 216anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 186first strand
Strand 2
B
191 195anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 111first strand
Strand 2
D
149 154parallel
Strand 3
D
141 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il