Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C8R entry

There are 6 chains in PDB entry 8C8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 37TRP 1498
B
 ALA 37TRP 1498
C
 ALA 37TRP 1498
D
 ALA 37TRP 1498
E
 ALA 37TRP 1498
F
 ALA 37TRP 1498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are189 helices in PDB entry 8C8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
105 115Right-handed alpha
Helix 3
AA3
A
129 131Right-handed 310
Helix 4
AA4
A
132 137Right-handed alpha
Helix 5
AA5
A
178 184Right-handed alpha
Helix 6
AA6
A
384 386Right-handed 310
Helix 7
AA7
A
390 392Right-handed 310
Helix 8
AA8
A
393 398Right-handed alpha
Helix 9
AA9
A
481 484Right-handed 310
Helix 10
AB1
A
533 538Right-handed alpha
Helix 11
AB2
A
543 547Right-handed alpha
Helix 12
AB3
A
560 564Right-handed 310
Helix 13
AB4
A
605 610Right-handed alpha
Helix 14
AB5
A
630 633Right-handed 310
Helix 15
AB6
A
681 689Right-handed alpha
Helix 16
AB7
A
694 697Right-handed 310
Helix 17
AB8
A
733 735Right-handed 310
Helix 18
AB9
A
769 772Right-handed 310
Helix 19
AC1
A
773 779Right-handed alpha
Helix 20
AC2
A
796 800Right-handed 310
Helix 21
AC3
A
850 853Right-handed 310
Helix 22
AC4
A
919 928Right-handed alpha
Helix 23
AC5
A
933 938Right-handed alpha
Helix 24
AC6
A
1029 1033Right-handed 310
Helix 25
AC7
A
1050 1054Right-handed 310
Helix 26
AC8
A
1078 1081Right-handed 310
Helix 27
AC9
A
1164 1167Right-handed 310
Helix 28
AD1
A
1183 1188Right-handed alpha
Helix 29
AD2
A
1256 1259Right-handed 310
Helix 30
AD3
A
1269 1271Right-handed 310
Helix 31
AD4
A
1291 1297Right-handed alpha
Helix 32
AD5
A
1389 1392Right-handed 310
Helix 33
AD6
B
105 115Right-handed alpha
Helix 34
AD7
B
129 133Right-handed 310
Helix 35
AD8
B
178 184Right-handed alpha
Helix 36
AD9
B
259 263Right-handed 310
Helix 37
AE1
B
384 386Right-handed 310
Helix 38
AE2
B
390 392Right-handed 310
Helix 39
AE3
B
393 398Right-handed alpha
Helix 40
AE4
B
481 484Right-handed 310
Helix 41
AE5
B
533 538Right-handed alpha
Helix 42
AE6
B
543 547Right-handed alpha
Helix 43
AE7
B
560 564Right-handed 310
Helix 44
AE8
B
605 610Right-handed alpha
Helix 45
AE9
B
630 633Right-handed 310
Helix 46
AF1
B
681 689Right-handed alpha
Helix 47
AF2
B
694 697Right-handed 310
Helix 48
AF3
B
733 735Right-handed 310
Helix 49
AF4
B
769 772Right-handed 310
Helix 50
AF5
B
773 779Right-handed alpha
Helix 51
AF6
B
796 800Right-handed 310
Helix 52
AF7
B
850 853Right-handed 310
Helix 53
AF8
B
919 928Right-handed alpha
Helix 54
AF9
B
933 938Right-handed alpha
Helix 55
AG1
B
1029 1033Right-handed 310
Helix 56
AG2
B
1050 1054Right-handed 310
Helix 57
AG3
B
1078 1081Right-handed 310
Helix 58
AG4
B
1164 1167Right-handed 310
Helix 59
AG5
B
1183 1188Right-handed alpha
Helix 60
AG6
B
1256 1259Right-handed 310
Helix 61
AG7
B
1269 1271Right-handed 310
Helix 62
AG8
B
1291 1297Right-handed alpha
Helix 63
AG9
B
1389 1392Right-handed 310
Helix 64
AH1
C
66 70Right-handed 310
Helix 65
AH2
C
105 113Right-handed alpha
Helix 66
AH3
C
129 131Right-handed 310
Helix 67
AH4
C
132 137Right-handed alpha
Helix 68
AH5
C
178 184Right-handed alpha
Helix 69
AH6
C
335 340Right-handed 310
Helix 70
AH7
C
384 386Right-handed 310
Helix 71
AH8
C
393 398Right-handed alpha
Helix 72
AH9
C
481 484Right-handed 310
Helix 73
AI1
C
533 538Right-handed alpha
Helix 74
AI2
C
543 547Right-handed alpha
Helix 75
AI3
C
560 564Right-handed 310
Helix 76
AI4
C
605 610Right-handed alpha
Helix 77
AI5
C
630 633Right-handed 310
Helix 78
AI6
C
681 689Right-handed alpha
Helix 79
AI7
C
694 697Right-handed 310
Helix 80
AI8
C
733 735Right-handed 310
Helix 81
AI9
C
769 772Right-handed 310
Helix 82
AJ1
C
773 779Right-handed alpha
Helix 83
AJ2
C
796 800Right-handed 310
Helix 84
AJ3
C
850 853Right-handed 310
Helix 85
AJ4
C
919 928Right-handed alpha
Helix 86
AJ5
C
933 938Right-handed alpha
Helix 87
AJ6
C
1029 1033Right-handed 310
Helix 88
AJ7
C
1050 1054Right-handed 310
Helix 89
AJ8
C
1078 1081Right-handed 310
Helix 90
AJ9
C
1164 1167Right-handed 310
Helix 91
AK1
C
1183 1188Right-handed alpha
Helix 92
AK2
C
1256 1259Right-handed 310
Helix 93
AK3
C
1269 1271Right-handed 310
Helix 94
AK4
C
1291 1297Right-handed alpha
Helix 95
AK5
C
1389 1392Right-handed 310
Helix 96
AK6
D
47 51Right-handed 310
Helix 97
AK7
D
105 115Right-handed alpha
Helix 98
AK8
D
129 131Right-handed 310
Helix 99
AK9
D
132 137Right-handed alpha
Helix 100
AL1
D
178 184Right-handed alpha
Helix 101
AL2
D
384 386Right-handed 310
Helix 102
AL3
D
390 392Right-handed 310
Helix 103
AL4
D
393 398Right-handed alpha
Helix 104
AL5
D
481 484Right-handed 310
Helix 105
AL6
D
533 538Right-handed alpha
Helix 106
AL7
D
543 547Right-handed alpha
Helix 107
AL8
D
560 564Right-handed 310
Helix 108
AL9
D
605 610Right-handed alpha
Helix 109
AM1
D
630 633Right-handed 310
Helix 110
AM2
D
681 689Right-handed alpha
Helix 111
AM3
D
694 697Right-handed 310
Helix 112
AM4
D
733 735Right-handed 310
Helix 113
AM5
D
769 772Right-handed 310
Helix 114
AM6
D
773 779Right-handed alpha
Helix 115
AM7
D
796 800Right-handed 310
Helix 116
AM8
D
850 853Right-handed 310
Helix 117
AM9
D
919 928Right-handed alpha
Helix 118
AN1
D
933 938Right-handed alpha
Helix 119
AN2
D
1029 1033Right-handed 310
Helix 120
AN3
D
1050 1054Right-handed 310
Helix 121
AN4
D
1078 1081Right-handed 310
Helix 122
AN5
D
1164 1167Right-handed 310
Helix 123
AN6
D
1183 1188Right-handed alpha
Helix 124
AN7
D
1256 1259Right-handed 310
Helix 125
AN8
D
1269 1271Right-handed 310
Helix 126
AN9
D
1291 1297Right-handed alpha
Helix 127
AO1
D
1389 1392Right-handed 310
Helix 128
AO2
E
105 115Right-handed alpha
Helix 129
AO3
E
129 133Right-handed 310
Helix 130
AO4
E
178 184Right-handed alpha
Helix 131
AO5
E
259 263Right-handed 310
Helix 132
AO6
E
384 386Right-handed 310
Helix 133
AO7
E
393 398Right-handed alpha
Helix 134
AO8
E
481 484Right-handed 310
Helix 135
AO9
E
533 538Right-handed alpha
Helix 136
AP1
E
543 547Right-handed alpha
Helix 137
AP2
E
560 564Right-handed 310
Helix 138
AP3
E
605 610Right-handed alpha
Helix 139
AP4
E
630 633Right-handed 310
Helix 140
AP5
E
681 689Right-handed alpha
Helix 141
AP6
E
694 697Right-handed 310
Helix 142
AP7
E
733 735Right-handed 310
Helix 143
AP8
E
769 772Right-handed 310
Helix 144
AP9
E
773 779Right-handed alpha
Helix 145
AQ1
E
796 800Right-handed 310
Helix 146
AQ2
E
850 853Right-handed 310
Helix 147
AQ3
E
919 928Right-handed alpha
Helix 148
AQ4
E
933 938Right-handed alpha
Helix 149
AQ5
E
1029 1033Right-handed 310
Helix 150
AQ6
E
1050 1054Right-handed 310
Helix 151
AQ7
E
1078 1081Right-handed 310
Helix 152
AQ8
E
1164 1167Right-handed 310
Helix 153
AQ9
E
1183 1188Right-handed alpha
Helix 154
AR1
E
1256 1259Right-handed 310
Helix 155
AR2
E
1269 1271Right-handed 310
Helix 156
AR3
E
1291 1297Right-handed alpha
Helix 157
AR4
E
1389 1392Right-handed 310
Helix 158
AR5
F
66 70Right-handed 310
Helix 159
AR6
F
105 113Right-handed alpha
Helix 160
AR7
F
129 131Right-handed 310
Helix 161
AR8
F
132 137Right-handed alpha
Helix 162
AR9
F
178 184Right-handed alpha
Helix 163
AS1
F
335 340Right-handed 310
Helix 164
AS2
F
384 386Right-handed 310
Helix 165
AS3
F
393 398Right-handed alpha
Helix 166
AS4
F
481 484Right-handed 310
Helix 167
AS5
F
533 538Right-handed alpha
Helix 168
AS6
F
543 547Right-handed alpha
Helix 169
AS7
F
560 564Right-handed 310
Helix 170
AS8
F
605 610Right-handed alpha
Helix 171
AS9
F
630 633Right-handed 310
Helix 172
AT1
F
681 689Right-handed alpha
Helix 173
AT2
F
694 697Right-handed 310
Helix 174
AT3
F
733 735Right-handed 310
Helix 175
AT4
F
769 772Right-handed 310
Helix 176
AT5
F
773 779Right-handed alpha
Helix 177
AT6
F
796 800Right-handed 310
Helix 178
AT7
F
850 853Right-handed 310
Helix 179
AT8
F
919 928Right-handed alpha
Helix 180
AT9
F
933 938Right-handed alpha
Helix 181
AU1
F
1029 1033Right-handed 310
Helix 182
AU2
F
1050 1054Right-handed 310
Helix 183
AU3
F
1078 1081Right-handed 310
Helix 184
AU4
F
1164 1167Right-handed 310
Helix 185
AU5
F
1183 1188Right-handed alpha
Helix 186
AU6
F
1256 1259Right-handed 310
Helix 187
AU7
F
1269 1271Right-handed 310
Helix 188
AU8
F
1291 1297Right-handed alpha
Helix 189
AU9
F
1389 1392Right-handed 310
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