Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C8U entry

There is 1 chain in PDB entry 8C8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 1032
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 8C8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
25 33Right-handed alpha
Helix 3
AA3
A
54 74Right-handed alpha
Helix 4
AA4
A
88 100Right-handed alpha
Helix 5
AA5
A
102 111Right-handed alpha
Helix 6
AA6
A
111 123Right-handed alpha
Helix 7
AA7
A
126 138Right-handed alpha
Helix 8
AA8
A
151 168Right-handed alpha
Helix 9
AA9
A
189 195Right-handed alpha
Helix 10
AB1
A
225 232Right-handed 310
Helix 11
AB2
A
259 264Right-handed alpha
Helix 12
AB3
A
276 280Right-handed alpha
Helix 13
AB4
A
317 320Right-handed 310
Helix 14
AB5
A
321 331Right-handed alpha
Helix 15
AB6
A
349 353Right-handed 310
Helix 16
AB7
A
356 359Right-handed 310
Helix 17
AB8
A
360 371Right-handed alpha
Helix 18
AB9
A
406 408Right-handed 310
Helix 19
AC1
A
409 419Right-handed alpha
Helix 20
AC2
A
424 428Right-handed 310
Helix 21
AC3
A
430 438Right-handed alpha
Helix 22
AC4
A
470 478Right-handed alpha
Helix 23
AC5
A
491 496Right-handed 310
Helix 24
AC6
A
515 522Right-handed alpha
Helix 25
AC7
A
522 527Right-handed alpha
Helix 26
AC8
A
534 541Right-handed alpha
Helix 27
AC9
A
552 554Right-handed 310
Helix 28
AD1
A
556 570Right-handed alpha
Helix 29
AD2
A
600 609Right-handed alpha
Helix 30
AD3
A
609 619Right-handed alpha
Helix 31
AD4
A
630 641Right-handed alpha
Helix 32
AD5
A
641 659Right-handed alpha
Helix 33
AD6
A
672 695Right-handed alpha
Helix 34
AD7
A
697 715Right-handed alpha
Helix 35
AD8
A
717 719Right-handed 310
Helix 36
AD9
A
720 726Right-handed alpha
Helix 37
AE1
A
730 752Right-handed alpha
Helix 38
AE2
A
755 768Right-handed alpha
Helix 39
AE3
A
770 774Right-handed 310
Helix 40
AE4
A
780 784Right-handed 310
Helix 41
AE5
A
785 809Right-handed alpha
Helix 42
AE6
A
830 833Right-handed 310
Helix 43
AE7
A
834 843Right-handed alpha
Helix 44
AE8
A
873 881Right-handed alpha
Helix 45
AE9
A
888 900Right-handed alpha
Helix 46
AF1
A
944 967Right-handed alpha
Helix 47
AF2
A
982 992Right-handed alpha
Helix 48
AF3
A
992 1000Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 8C8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
147 148parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
171 181anti-parallel
Strand 3
A
395 404anti-parallel
Strand 4
A
442 443anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 275first strand
Strand 2
A
242 248anti-parallel
Strand 3
A
251 256anti-parallel
Strand 4
A
217 223parallel
Strand 5
A
197 210anti-parallel
Strand 6
A
374 385anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
234 237parallel
Strand 3
A
314 316anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
576 580parallel
Strand 3
A
547 550parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
A
513 514anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
A
457 459anti-parallel
Strand 3
A
506 509anti-parallel
Strand 4
A
498 499anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
844 850first strand
Strand 2
A
817 823parallel
Strand 3
A
935 940anti-parallel
Strand 4
A
927 932anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
857 863first strand
Strand 2
A
917 923anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
902 905first strand
Strand 2
A
910 913anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1002 1007first strand
Strand 2
A
975 980parallel
Strand 3
A
1022 1029anti-parallel
Strand 4
A
1015 1019anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il