Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C8V entry

There is 1 chain in PDB entry 8C8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1032

There are 48 helices in PDB entry 8C8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	25	Right-handed alpha
Helix 2	AA2	A	25	33	Right-handed alpha
Helix 3	AA3	A	54	74	Right-handed alpha
Helix 4	AA4	A	88	100	Right-handed alpha
Helix 5	AA5	A	103	111	Right-handed alpha
Helix 6	AA6	A	111	138	Right-handed alpha
Helix 7	AA7	A	151	168	Right-handed alpha
Helix 8	AA8	A	189	195	Right-handed alpha
Helix 9	AA9	A	225	232	Right-handed 310
Helix 10	AB1	A	259	264	Right-handed alpha
Helix 11	AB2	A	277	279	Right-handed 310
Helix 12	AB3	A	317	320	Right-handed 310
Helix 13	AB4	A	321	331	Right-handed alpha
Helix 14	AB5	A	349	353	Right-handed 310
Helix 15	AB6	A	356	359	Right-handed 310
Helix 16	AB7	A	360	371	Right-handed alpha
Helix 17	AB8	A	406	408	Right-handed 310
Helix 18	AB9	A	409	419	Right-handed alpha
Helix 19	AC1	A	424	428	Right-handed 310
Helix 20	AC2	A	430	438	Right-handed alpha
Helix 21	AC3	A	470	478	Right-handed alpha
Helix 22	AC4	A	491	496	Right-handed 310
Helix 23	AC5	A	515	522	Right-handed alpha
Helix 24	AC6	A	522	527	Right-handed alpha
Helix 25	AC7	A	534	541	Right-handed alpha
Helix 26	AC8	A	552	555	Right-handed 310
Helix 27	AC9	A	556	569	Right-handed alpha
Helix 28	AD1	A	600	609	Right-handed alpha
Helix 29	AD2	A	609	620	Right-handed alpha
Helix 30	AD3	A	630	641	Right-handed alpha
Helix 31	AD4	A	641	660	Right-handed alpha
Helix 32	AD5	A	672	695	Right-handed alpha
Helix 33	AD6	A	697	715	Right-handed alpha
Helix 34	AD7	A	715	726	Right-handed alpha
Helix 35	AD8	A	730	752	Right-handed alpha
Helix 36	AD9	A	755	768	Right-handed alpha
Helix 37	AE1	A	770	774	Right-handed 310
Helix 38	AE2	A	780	784	Right-handed 310
Helix 39	AE3	A	785	809	Right-handed alpha
Helix 40	AE4	A	830	833	Right-handed 310
Helix 41	AE5	A	834	843	Right-handed alpha
Helix 42	AE6	A	864	873	Right-handed alpha
Helix 43	AE7	A	875	885	Right-handed alpha
Helix 44	AE8	A	887	898	Right-handed alpha
Helix 45	AE9	A	913	915	Right-handed 310
Helix 46	AF1	A	944	967	Right-handed alpha
Helix 47	AF2	A	982	992	Right-handed alpha
Helix 48	AF3	A	992	1000	Right-handed alpha

There are 12 sheets in PDB entry 8C8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	142	148	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	171	181	anti-parallel
Strand 3	A	395	404	anti-parallel
Strand 4	A	442	443	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	275	first strand
Strand 2	A	242	248	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	217	223	parallel
Strand 5	A	197	210	anti-parallel
Strand 6	A	374	385	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	234	237	parallel
Strand 3	A	314	316	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	576	580	parallel
Strand 3	A	547	550	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	513	514	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	466	first strand
Strand 2	A	457	459	anti-parallel
Strand 3	A	506	509	anti-parallel
Strand 4	A	498	499	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	584	first strand
Strand 2	A	627	628	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	844	850	first strand
Strand 2	A	817	824	parallel
Strand 3	A	935	940	anti-parallel
Strand 4	A	927	931	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	863	first strand
Strand 2	A	917	923	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	900	903	first strand
Strand 2	A	909	912	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1002	1007	first strand
Strand 2	A	975	980	parallel
Strand 3	A	1022	1030	anti-parallel
Strand 4	A	1015	1019	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C8V