Analysis of interatomic Contacts of Structural Units in PDB entry:
8C93

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C93 entry

There are 17 chains in PDB entry 8C93 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 1	U 2903
D	MET 1	LYS 208
E	MET 1	ALA 201
J	MET 1	ILE 142
K	MET 1	VAL 122
N	MET 1	GLU 120
Q	ALA 1	ALA 117
R	MET 1	ALA 103
S	MET 1	ARG 110
T	MET 1	LEU 93
U	ALA 1	ILE 102
Y	MET 1	ALA 63
0	ASN 5	ALA 55
2	SER 8	VAL 44
Z	ALA 1	GLU 57
L	ARG 2	GLU 144
P	SER 1	ASN 114

There are 57 helices in PDB entry 8C93. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	39	44	Right-handed alpha
Helix 2	AA2	D	61	72	Right-handed alpha
Helix 3	AA3	D	97	103	Right-handed 310
Helix 4	AA4	E	24	40	Right-handed alpha
Helix 5	AA5	E	48	52	Right-handed 310
Helix 6	AA6	E	97	115	Right-handed alpha
Helix 7	AA7	E	130	142	Right-handed alpha
Helix 8	AA8	E	154	160	Right-handed alpha
Helix 9	AA9	E	171	175	Right-handed 310
Helix 10	AB1	E	178	183	Right-handed alpha
Helix 11	AB2	E	190	201	Right-handed alpha
Helix 12	AB3	J	7	11	Right-handed 310
Helix 13	AB4	J	24	38	Right-handed alpha
Helix 14	AB5	J	59	62	Right-handed 310
Helix 15	AB6	J	67	72	Right-handed alpha
Helix 16	AB7	J	88	96	Right-handed alpha
Helix 17	AB8	J	97	109	Right-handed alpha
Helix 18	AB9	J	112	122	Right-handed alpha
Helix 19	AC1	J	131	136	Right-handed 310
Helix 20	AC2	K	109	113	Right-handed 310
Helix 21	AC3	N	13	32	Right-handed alpha
Helix 22	AC4	N	37	56	Right-handed alpha
Helix 23	AC5	N	59	69	Right-handed alpha
Helix 24	AC6	N	72	79	Right-handed alpha
Helix 25	AC7	N	82	88	Right-handed alpha
Helix 26	AC8	Q	5	20	Right-handed alpha
Helix 27	AC9	Q	25	30	Right-handed alpha
Helix 28	AD1	Q	30	70	Right-handed alpha
Helix 29	AD2	Q	74	85	Right-handed alpha
Helix 30	AD3	Q	90	101	Right-handed alpha
Helix 31	AD4	Q	102	115	Right-handed alpha
Helix 32	AD5	S	13	22	Right-handed alpha
Helix 33	AD6	S	23	25	Right-handed 310
Helix 34	AD7	S	28	38	Right-handed alpha
Helix 35	AD8	S	42	62	Right-handed alpha
Helix 36	AD9	T	3	9	Right-handed alpha
Helix 37	AE1	T	17	27	Right-handed alpha
Helix 38	AE2	T	39	52	Right-handed alpha
Helix 39	AE3	U	65	67	Right-handed 310
Helix 40	AE4	Y	2	8	Right-handed alpha
Helix 41	AE5	Y	9	34	Right-handed alpha
Helix 42	AE6	Y	39	45	Right-handed 310
Helix 43	AE7	Y	46	56	Right-handed alpha
Helix 44	AE8	0	8	17	Right-handed alpha
Helix 45	AE9	2	9	17	Right-handed alpha
Helix 46	AF1	2	17	24	Right-handed alpha
Helix 47	AF2	2	24	38	Right-handed alpha
Helix 48	AF3	Z	16	27	Right-handed alpha
Helix 49	AF4	Z	40	50	Right-handed alpha
Helix 50	AF5	L	2	6	Right-handed 310
Helix 51	AF6	L	94	99	Right-handed alpha
Helix 52	AF7	L	128	136	Right-handed alpha
Helix 53	AF8	L	137	139	Right-handed 310
Helix 54	AF9	P	2	11	Right-handed alpha
Helix 55	AG1	P	52	55	Right-handed 310
Helix 56	AG2	P	96	101	Right-handed 310
Helix 57	AG3	P	103	108	Right-handed 310

There are 19 sheets in PDB entry 8C93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	28	first strand
Strand 2	D	4	15	anti-parallel
Strand 3	D	200	205	anti-parallel
Strand 4	D	107	112	anti-parallel
Strand 5	D	169	175	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	83	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	32	38	anti-parallel
Strand 4	D	95	96	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	181	first strand
Strand 2	D	186	187	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	121	first strand
Strand 2	E	185	189	parallel
Strand 3	E	146	149	parallel
Strand 4	E	168	170	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	125	first strand
Strand 2	J	54	57	parallel
Strand 3	J	16	19	parallel
Strand 4	J	138	139	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	10	first strand
Strand 2	K	19	24	anti-parallel
Strand 3	K	38	43	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	87	anti-parallel
Strand 6	K	7	10	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	77	79	first strand
Strand 2	P	67	74	anti-parallel
Strand 3	P	57	64	anti-parallel
Strand 4	P	45	50	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	36	first strand
Strand 2	N	109	115	anti-parallel
Strand 3	N	95	102	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	15	first strand
Strand 2	R	2	6	anti-parallel
Strand 3	R	38	41	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	20	22	first strand
Strand 2	R	92	101	anti-parallel
Strand 3	R	59	68	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	77	first strand
Strand 2	R	84	89	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2	10	first strand
Strand 2	S	101	108	anti-parallel
Strand 3	S	70	78	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	29	34	anti-parallel
Strand 3	T	81	87	anti-parallel
Strand 4	T	55	62	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	33	35	first strand
Strand 2	U	21	27	anti-parallel
Strand 3	U	9	12	anti-parallel
Strand 4	U	69	73	anti-parallel
Strand 5	U	78	79	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	86	first strand
Strand 2	U	91	95	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	27	29	first strand
Strand 2	0	36	38	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	47	48	first strand
Strand 2	0	51	52	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	34	38	first strand
Strand 2	Z	3	8	anti-parallel
Strand 3	Z	54	55	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	36	42	first strand
Strand 2	P	25	33	anti-parallel
Strand 3	P	80	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C93

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C93