Analysis of interatomic Contacts of Structural Units in PDB entry:
8C94

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C94 entry

There are 21 chains in PDB entry 8C94 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ALA 1	ILE 54
2	SER 8	LYS 46
A	G 1	U 2903
B	U 1	A 119
D	MET 1	ALA 209
E	MET 1	ALA 201
F	ALA 1	ARG 177
J	MET 1	ILE 142
K	MET 1	VAL 122
L	ARG 2	GLU 144
N	MET 1	GLU 120
O	ASP 2	PHE 117
P	SER 1	ASN 114
Q	ALA 1	ALA 117
R	MET 1	ALA 103
S	MET 1	ARG 110
U	ALA 1	ILE 102
V	MET 1	ALA 94
W	ALA 14	GLU 81
Y	MET 1	ALA 61
Z	ALA 1	GLU 58

There are 67 helices in PDB entry 8C94. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	8	16	Right-handed alpha
Helix 2	AA2	0	17	20	Right-handed 310
Helix 3	AA3	2	9	17	Right-handed alpha
Helix 4	AA4	2	17	22	Right-handed alpha
Helix 5	AA5	2	24	38	Right-handed alpha
Helix 6	AA6	D	39	44	Right-handed alpha
Helix 7	AA7	D	61	72	Right-handed alpha
Helix 8	AA8	D	97	101	Right-handed 310
Helix 9	AA9	D	120	126	Right-handed alpha
Helix 10	AB1	E	15	21	Right-handed alpha
Helix 11	AB2	E	24	39	Right-handed alpha
Helix 12	AB3	E	97	115	Right-handed alpha
Helix 13	AB4	E	130	141	Right-handed alpha
Helix 14	AB5	E	154	160	Right-handed alpha
Helix 15	AB6	E	176	183	Right-handed alpha
Helix 16	AB7	E	190	201	Right-handed alpha
Helix 17	AB8	F	3	20	Right-handed alpha
Helix 18	AB9	F	23	27	Right-handed 310
Helix 19	AC1	F	41	44	Right-handed 310
Helix 20	AC2	F	45	60	Right-handed alpha
Helix 21	AC3	F	92	105	Right-handed alpha
Helix 22	AC4	F	133	137	Right-handed 310
Helix 23	AC5	F	141	145	Right-handed 310
Helix 24	AC6	F	161	172	Right-handed alpha
Helix 25	AC7	J	24	38	Right-handed alpha
Helix 26	AC8	J	58	62	Right-handed 310
Helix 27	AC9	J	67	72	Right-handed alpha
Helix 28	AD1	J	89	96	Right-handed alpha
Helix 29	AD2	J	96	107	Right-handed alpha
Helix 30	AD3	J	112	122	Right-handed alpha
Helix 31	AD4	J	132	136	Right-handed 310
Helix 32	AD5	K	109	111	Right-handed 310
Helix 33	AD6	K	112	118	Right-handed alpha
Helix 34	AD7	L	2	6	Right-handed 310
Helix 35	AD8	L	128	138	Right-handed alpha
Helix 36	AD9	N	13	32	Right-handed alpha
Helix 37	AE1	N	37	56	Right-handed alpha
Helix 38	AE2	N	59	69	Right-handed alpha
Helix 39	AE3	N	73	79	Right-handed alpha
Helix 40	AE4	N	82	87	Right-handed alpha
Helix 41	AE5	O	3	20	Right-handed alpha
Helix 42	AE6	O	67	86	Right-handed alpha
Helix 43	AE7	O	101	115	Right-handed alpha
Helix 44	AE8	P	2	12	Right-handed alpha
Helix 45	AE9	P	52	55	Right-handed 310
Helix 46	AF1	P	96	101	Right-handed 310
Helix 47	AF2	P	103	108	Right-handed alpha
Helix 48	AF3	Q	5	19	Right-handed alpha
Helix 49	AF4	Q	25	30	Right-handed alpha
Helix 50	AF5	Q	30	71	Right-handed alpha
Helix 51	AF6	Q	74	85	Right-handed alpha
Helix 52	AF7	Q	90	101	Right-handed alpha
Helix 53	AF8	Q	101	117	Right-handed alpha
Helix 54	AF9	S	14	22	Right-handed alpha
Helix 55	AG1	S	23	25	Right-handed 310
Helix 56	AG2	S	28	38	Right-handed alpha
Helix 57	AG3	S	41	61	Right-handed alpha
Helix 58	AG4	S	65	69	Right-handed 310
Helix 59	AG5	V	13	23	Right-handed alpha
Helix 60	AG6	V	44	50	Right-handed alpha
Helix 61	AG7	V	51	52	Right-handed 310
Helix 62	AG8	V	53	58	Right-handed 310
Helix 63	AG9	Y	9	34	Right-handed alpha
Helix 64	AH1	Y	39	44	Right-handed 310
Helix 65	AH2	Y	48	56	Right-handed alpha
Helix 66	AH3	Z	16	27	Right-handed alpha
Helix 67	AH4	Z	40	50	Right-handed alpha

There are 25 sheets in PDB entry 8C94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	28	29	first strand
Strand 2	0	36	37	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	175	first strand
Strand 2	D	107	112	anti-parallel
Strand 3	D	200	205	anti-parallel
Strand 4	D	4	15	anti-parallel
Strand 5	D	21	28	anti-parallel
Strand 6	D	186	190	anti-parallel
Strand 7	D	177	181	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	83	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	32	38	anti-parallel
Strand 4	D	95	96	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	121	first strand
Strand 2	E	186	189	parallel
Strand 3	E	146	150	parallel
Strand 4	E	167	171	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	90	first strand
Strand 2	F	30	36	anti-parallel
Strand 3	F	152	157	anti-parallel
Strand 4	F	127	129	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	68	first strand
Strand 2	F	83	87	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	124	first strand
Strand 2	J	53	57	parallel
Strand 3	J	15	19	parallel
Strand 4	J	138	139	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	74	first strand
Strand 2	J	87	88	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	8	first strand
Strand 2	K	16	24	anti-parallel
Strand 3	K	38	46	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	86	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	79	first strand
Strand 2	P	67	74	anti-parallel
Strand 3	P	57	64	anti-parallel
Strand 4	P	36	50	anti-parallel
Strand 5	P	24	33	anti-parallel
Strand 6	P	80	87	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	90	first strand
Strand 2	L	121	122	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	36	first strand
Strand 2	N	108	115	anti-parallel
Strand 3	N	95	103	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	25	30	first strand
Strand 2	O	35	40	anti-parallel
Strand 3	O	47	50	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	15	first strand
Strand 2	R	2	6	anti-parallel
Strand 3	R	40	42	anti-parallel
Strand 4	R	46	47	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	22	first strand
Strand 2	R	92	101	anti-parallel
Strand 3	R	59	68	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	74	78	first strand
Strand 2	R	83	87	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	10	first strand
Strand 2	S	97	108	anti-parallel
Strand 3	S	70	83	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	21	22	first strand
Strand 2	U	10	12	anti-parallel
Strand 3	U	69	73	anti-parallel
Strand 4	U	78	80	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	24	27	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	64	65	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	43	44	first strand
Strand 2	U	57	58	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	85	first strand
Strand 2	U	92	95	anti-parallel
Strand 3	U	100	101	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	3	5	first strand
Strand 2	V	61	65	parallel
Strand 3	V	68	79	anti-parallel
Strand 4	V	86	93	anti-parallel
Strand 5	V	25	31	parallel
Strand 6	V	38	43	anti-parallel
Strand 7	V	7	8	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	18	19	first strand
Strand 2	W	32	35	anti-parallel
Strand 3	W	55	57	anti-parallel
Strand 4	W	47	49	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	26	27	first strand
Strand 2	W	61	68	anti-parallel
Strand 3	W	73	80	anti-parallel
Strand 4	W	42	43	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	34	38	first strand
Strand 2	Z	3	8	anti-parallel
Strand 3	Z	54	56	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C94

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C94