Analysis of interatomic Contacts of Structural Units in PDB entry:
8C95

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C95 entry

There are 16 chains in PDB entry 8C95 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	LEU 10	SER 45
A	G 1	U 2903
B	U 1	A 119
E	MET 1	ALA 201
F	ALA 1	ARG 177
J	MET 1	ILE 142
L	ARG 2	GLU 144
O	ASP 2	PHE 117
Q	ALA 1	ALA 117
R	MET 1	ALA 103
S	MET 1	ARG 110
U	ALA 1	ILE 102
V	MET 1	ALA 94
W	THR 6	GLU 81
Y	MET 1	LYS 60
Z	ALA 1	GLU 58

There are 48 helices in PDB entry 8C95. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	10	17	Right-handed alpha
Helix 2	AA2	2	17	23	Right-handed alpha
Helix 3	AA3	2	24	38	Right-handed alpha
Helix 4	AA4	E	15	21	Right-handed alpha
Helix 5	AA5	E	24	40	Right-handed alpha
Helix 6	AA6	E	97	115	Right-handed alpha
Helix 7	AA7	E	130	141	Right-handed alpha
Helix 8	AA8	E	154	160	Right-handed alpha
Helix 9	AA9	E	176	183	Right-handed alpha
Helix 10	AB1	E	191	201	Right-handed alpha
Helix 11	AB2	F	3	20	Right-handed alpha
Helix 12	AB3	F	46	60	Right-handed alpha
Helix 13	AB4	F	92	106	Right-handed alpha
Helix 14	AB5	F	133	137	Right-handed 310
Helix 15	AB6	F	141	145	Right-handed 310
Helix 16	AB7	F	161	172	Right-handed alpha
Helix 17	AB8	J	24	37	Right-handed alpha
Helix 18	AB9	J	58	62	Right-handed 310
Helix 19	AC1	J	67	72	Right-handed alpha
Helix 20	AC2	J	89	96	Right-handed alpha
Helix 21	AC3	J	96	107	Right-handed alpha
Helix 22	AC4	J	112	120	Right-handed alpha
Helix 23	AC5	J	132	136	Right-handed 310
Helix 24	AC6	L	2	6	Right-handed 310
Helix 25	AC7	L	70	74	Right-handed 310
Helix 26	AC8	L	128	138	Right-handed alpha
Helix 27	AC9	O	3	19	Right-handed alpha
Helix 28	AD1	O	55	60	Right-handed alpha
Helix 29	AD2	O	67	86	Right-handed alpha
Helix 30	AD3	O	101	114	Right-handed alpha
Helix 31	AD4	Q	5	19	Right-handed alpha
Helix 32	AD5	Q	25	30	Right-handed alpha
Helix 33	AD6	Q	30	72	Right-handed alpha
Helix 34	AD7	Q	74	85	Right-handed alpha
Helix 35	AD8	Q	90	101	Right-handed alpha
Helix 36	AD9	Q	101	117	Right-handed alpha
Helix 37	AE1	S	13	22	Right-handed alpha
Helix 38	AE2	S	23	25	Right-handed 310
Helix 39	AE3	S	28	38	Right-handed alpha
Helix 40	AE4	S	41	61	Right-handed alpha
Helix 41	AE5	V	13	23	Right-handed alpha
Helix 42	AE6	V	44	52	Right-handed alpha
Helix 43	AE7	V	53	58	Right-handed 310
Helix 44	AE8	Y	9	34	Right-handed alpha
Helix 45	AE9	Y	39	43	Right-handed 310
Helix 46	AF1	Y	45	56	Right-handed alpha
Helix 47	AF2	Z	16	27	Right-handed alpha
Helix 48	AF3	Z	40	51	Right-handed alpha

There are 18 sheets in PDB entry 8C95. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	3	first strand
Strand 2	E	12	13	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	121	first strand
Strand 2	E	187	189	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	150	first strand
Strand 2	E	168	171	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	66	first strand
Strand 2	F	86	89	anti-parallel
Strand 3	F	30	35	anti-parallel
Strand 4	F	154	157	anti-parallel
Strand 5	F	127	128	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	19	first strand
Strand 2	J	55	57	parallel
Strand 3	J	123	124	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	77	first strand
Strand 2	J	84	88	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	47	52	first strand
Strand 2	O	35	40	anti-parallel
Strand 3	O	25	30	anti-parallel
Strand 4	O	91	93	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	14	first strand
Strand 2	R	2	6	anti-parallel
Strand 3	R	40	42	anti-parallel
Strand 4	R	46	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	22	first strand
Strand 2	R	92	101	anti-parallel
Strand 3	R	59	68	anti-parallel
Strand 4	R	32	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	78	first strand
Strand 2	R	83	89	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	10	first strand
Strand 2	S	101	108	anti-parallel
Strand 3	S	70	78	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	63	65	first strand
Strand 2	U	32	36	anti-parallel
Strand 3	U	21	27	anti-parallel
Strand 4	U	9	12	anti-parallel
Strand 5	U	69	73	anti-parallel
Strand 6	U	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	44	first strand
Strand 2	U	57	61	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	84	first strand
Strand 2	U	93	95	anti-parallel
Strand 3	U	100	101	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	3	5	first strand
Strand 2	V	61	65	parallel
Strand 3	V	68	79	anti-parallel
Strand 4	V	86	93	anti-parallel
Strand 5	V	25	31	parallel
Strand 6	V	38	43	anti-parallel
Strand 7	V	7	8	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	32	35	first strand
Strand 2	W	54	57	anti-parallel
Strand 3	W	47	49	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	41	43	first strand
Strand 2	W	73	80	parallel
Strand 3	W	61	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	35	38	first strand
Strand 2	Z	3	8	anti-parallel
Strand 3	Z	54	57	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C95

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C95