Analysis of interatomic Contacts of Structural Units in PDB entry:
8C97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C97 entry

There are 12 chains in PDB entry 8C97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	VAL 24	LYS 56
2	LEU 10	LYS 46
A	G 1	U 2903
D	MET 1	ALA 209
E	MET 1	ALA 201
K	MET 1	VAL 122
N	MET 1	GLU 120
P	SER 1	ASN 114
S	MET 1	ARG 110
T	ARG 3	LEU 93
U	ALA 1	ILE 102
Y	MET 1	ALA 63

There are 32 helices in PDB entry 8C97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	11	16	Right-handed alpha
Helix 2	AA2	2	17	24	Right-handed alpha
Helix 3	AA3	2	24	36	Right-handed alpha
Helix 4	AA4	D	39	44	Right-handed alpha
Helix 5	AA5	D	61	72	Right-handed alpha
Helix 6	AA6	D	97	103	Right-handed 310
Helix 7	AA7	E	15	20	Right-handed alpha
Helix 8	AA8	E	24	39	Right-handed alpha
Helix 9	AA9	E	97	115	Right-handed alpha
Helix 10	AB1	E	130	142	Right-handed alpha
Helix 11	AB2	E	154	160	Right-handed alpha
Helix 12	AB3	E	176	183	Right-handed alpha
Helix 13	AB4	E	191	201	Right-handed alpha
Helix 14	AB5	K	109	113	Right-handed 310
Helix 15	AB6	N	13	32	Right-handed alpha
Helix 16	AB7	N	37	56	Right-handed alpha
Helix 17	AB8	N	59	68	Right-handed alpha
Helix 18	AB9	N	72	79	Right-handed alpha
Helix 19	AC1	N	82	88	Right-handed alpha
Helix 20	AC2	P	2	10	Right-handed alpha
Helix 21	AC3	P	52	55	Right-handed 310
Helix 22	AC4	P	96	101	Right-handed 310
Helix 23	AC5	P	103	108	Right-handed 310
Helix 24	AC6	S	15	23	Right-handed alpha
Helix 25	AC7	S	28	39	Right-handed alpha
Helix 26	AC8	S	42	62	Right-handed alpha
Helix 27	AC9	T	17	28	Right-handed alpha
Helix 28	AD1	T	39	52	Right-handed alpha
Helix 29	AD2	U	65	67	Right-handed 310
Helix 30	AD3	Y	2	7	Right-handed alpha
Helix 31	AD4	Y	9	33	Right-handed alpha
Helix 32	AD5	Y	46	56	Right-handed alpha

There are 15 sheets in PDB entry 8C97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	28	29	first strand
Strand 2	0	36	37	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	47	48	first strand
Strand 2	0	51	52	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	176	first strand
Strand 2	D	106	111	anti-parallel
Strand 3	D	200	205	anti-parallel
Strand 4	D	4	8	anti-parallel
Strand 5	D	27	28	anti-parallel
Strand 6	D	186	187	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	21	24	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	79	83	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	121	first strand
Strand 2	E	185	189	parallel
Strand 3	E	146	150	parallel
Strand 4	E	168	171	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	10	first strand
Strand 2	K	16	24	anti-parallel
Strand 3	K	38	46	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	86	anti-parallel
Strand 6	K	6	10	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	70	first strand
Strand 2	K	76	79	anti-parallel
Strand 3	P	67	74	anti-parallel
Strand 4	P	57	64	anti-parallel
Strand 5	P	36	50	anti-parallel
Strand 6	P	23	33	anti-parallel
Strand 7	P	80	88	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	36	first strand
Strand 2	N	109	115	anti-parallel
Strand 3	N	95	102	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2	10	first strand
Strand 2	S	101	108	anti-parallel
Strand 3	S	70	78	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	13	14	first strand
Strand 2	T	29	34	anti-parallel
Strand 3	T	80	87	anti-parallel
Strand 4	T	55	63	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	67	68	first strand
Strand 2	T	75	76	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	33	35	first strand
Strand 2	U	21	27	anti-parallel
Strand 3	U	9	12	anti-parallel
Strand 4	U	69	73	anti-parallel
Strand 5	U	78	79	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	41	first strand
Strand 2	U	60	61	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	86	first strand
Strand 2	U	91	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C97

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C97