Analysis of interatomic Contacts of Structural Units in PDB entry:
8C9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C9F entry

There is 1 chain in PDB entry 8C9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 921
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8C9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 35Right-handed alpha
Helix 2
AA2
A
35 44Right-handed alpha
Helix 3
AA3
A
64 83Right-handed alpha
Helix 4
AA4
A
98 109Right-handed alpha
Helix 5
AA5
A
112 116Right-handed 310
Helix 6
AA6
A
117 144Right-handed alpha
Helix 7
AA7
A
157 174Right-handed alpha
Helix 8
AA8
A
195 197Right-handed 310
Helix 9
AA9
A
234 241Right-handed 310
Helix 10
AB1
A
268 277Right-handed alpha
Helix 11
AB2
A
290 293Right-handed 310
Helix 12
AB3
A
330 340Right-handed alpha
Helix 13
AB4
A
358 362Right-handed 310
Helix 14
AB5
A
369 380Right-handed alpha
Helix 15
AB6
A
415 417Right-handed 310
Helix 16
AB7
A
418 429Right-handed alpha
Helix 17
AB8
A
434 446Right-handed alpha
Helix 18
AB9
A
475 490Right-handed alpha
Helix 19
AC1
A
491 497Right-handed 310
Helix 20
AC2
A
498 503Right-handed alpha
Helix 21
AC3
A
525 532Right-handed alpha
Helix 22
AC4
A
532 537Right-handed alpha
Helix 23
AC5
A
556 559Right-handed 310
Helix 24
AC6
A
560 573Right-handed alpha
Helix 25
AC7
A
604 612Right-handed alpha
Helix 26
AC8
A
614 623Right-handed alpha
Helix 27
AC9
A
633 658Right-handed alpha
Helix 28
AD1
A
674 698Right-handed alpha
Helix 29
AD2
A
699 713Right-handed alpha
Helix 30
AD3
A
718 724Right-handed alpha
Helix 31
AD4
A
734 756Right-handed alpha
Helix 32
AD5
A
760 769Right-handed alpha
Helix 33
AD6
A
777 781Right-handed 310
Helix 34
AD7
A
791 820Right-handed alpha
Helix 35
AD8
A
835 845Right-handed alpha
Helix 36
AD9
A
848 853Right-handed alpha
Helix 37
AE1
A
907 916Right-handed alpha
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There are 10 sheets in PDB entry 8C9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
550 554parallel
Strand 3
A
580 584parallel
Strand 4
A
430 432parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
153 154parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
177 187anti-parallel
Strand 3
A
404 413anti-parallel
Strand 4
A
450 451anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 288first strand
Strand 2
A
252 257anti-parallel
Strand 3
A
261 265anti-parallel
Strand 4
A
226 232parallel
Strand 5
A
199 217anti-parallel
Strand 6
A
296 298anti-parallel
Strand 7
A
305 310anti-parallel
Strand 8
A
243 246parallel
Strand 9
A
323 325anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 288first strand
Strand 2
A
252 257anti-parallel
Strand 3
A
261 265anti-parallel
Strand 4
A
226 232parallel
Strand 5
A
199 217anti-parallel
Strand 6
A
383 396anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
523 524anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
465 466anti-parallel
Strand 3
A
518 519anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 589first strand
Strand 2
A
630 632parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 860first strand
Strand 2
A
828 834parallel
Strand 3
A
875 881anti-parallel
Strand 4
A
871 872anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
885 886first strand
Strand 2
A
893 894anti-parallel
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