Analysis of interatomic Contacts of Structural Units in PDB entry:
8C9G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C9G entry

There are 2 chains in PDB entry 8C9G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 921
B	MET 1	GLN 921

There are 76 helices in PDB entry 8C9G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed 310
Helix 2	AA2	A	19	35	Right-handed alpha
Helix 3	AA3	A	35	44	Right-handed alpha
Helix 4	AA4	A	64	83	Right-handed alpha
Helix 5	AA5	A	98	108	Right-handed alpha
Helix 6	AA6	A	117	143	Right-handed alpha
Helix 7	AA7	A	157	174	Right-handed alpha
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	234	241	Right-handed 310
Helix 10	AB1	A	268	276	Right-handed alpha
Helix 11	AB2	A	290	293	Right-handed 310
Helix 12	AB3	A	326	329	Right-handed 310
Helix 13	AB4	A	330	340	Right-handed alpha
Helix 14	AB5	A	365	380	Right-handed alpha
Helix 15	AB6	A	415	417	Right-handed 310
Helix 16	AB7	A	418	428	Right-handed alpha
Helix 17	AB8	A	434	447	Right-handed alpha
Helix 18	AB9	A	475	490	Right-handed alpha
Helix 19	AC1	A	491	497	Right-handed alpha
Helix 20	AC2	A	499	503	Right-handed 310
Helix 21	AC3	A	525	532	Right-handed alpha
Helix 22	AC4	A	532	537	Right-handed alpha
Helix 23	AC5	A	556	558	Right-handed 310
Helix 24	AC6	A	560	574	Right-handed alpha
Helix 25	AC7	A	604	612	Right-handed alpha
Helix 26	AC8	A	613	624	Right-handed alpha
Helix 27	AC9	A	633	658	Right-handed alpha
Helix 28	AD1	A	662	667	Right-handed alpha
Helix 29	AD2	A	674	697	Right-handed alpha
Helix 30	AD3	A	699	713	Right-handed alpha
Helix 31	AD4	A	718	730	Right-handed alpha
Helix 32	AD5	A	734	756	Right-handed alpha
Helix 33	AD6	A	759	770	Right-handed alpha
Helix 34	AD7	A	777	781	Right-handed 310
Helix 35	AD8	A	791	819	Right-handed alpha
Helix 36	AD9	A	824	826	Right-handed 310
Helix 37	AE1	A	835	844	Right-handed alpha
Helix 38	AE2	A	848	853	Right-handed alpha
Helix 39	AE3	A	907	918	Right-handed alpha
Helix 40	AE4	B	3	7	Right-handed 310
Helix 41	AE5	B	19	35	Right-handed alpha
Helix 42	AE6	B	35	44	Right-handed alpha
Helix 43	AE7	B	64	83	Right-handed alpha
Helix 44	AE8	B	98	109	Right-handed alpha
Helix 45	AE9	B	112	116	Right-handed 310
Helix 46	AF1	B	117	143	Right-handed alpha
Helix 47	AF2	B	157	174	Right-handed alpha
Helix 48	AF3	B	195	197	Right-handed 310
Helix 49	AF4	B	234	241	Right-handed 310
Helix 50	AF5	B	268	277	Right-handed alpha
Helix 51	AF6	B	290	293	Right-handed 310
Helix 52	AF7	B	330	341	Right-handed alpha
Helix 53	AF8	B	365	380	Right-handed alpha
Helix 54	AF9	B	418	429	Right-handed alpha
Helix 55	AG1	B	435	446	Right-handed alpha
Helix 56	AG2	B	475	490	Right-handed alpha
Helix 57	AG3	B	491	495	Right-handed 310
Helix 58	AG4	B	498	503	Right-handed 310
Helix 59	AG5	B	525	532	Right-handed alpha
Helix 60	AG6	B	532	537	Right-handed alpha
Helix 61	AG7	B	556	558	Right-handed 310
Helix 62	AG8	B	560	573	Right-handed alpha
Helix 63	AG9	B	604	612	Right-handed alpha
Helix 64	AH1	B	613	623	Right-handed alpha
Helix 65	AH2	B	633	658	Right-handed alpha
Helix 66	AH3	B	674	697	Right-handed alpha
Helix 67	AH4	B	699	713	Right-handed alpha
Helix 68	AH5	B	718	728	Right-handed alpha
Helix 69	AH6	B	734	756	Right-handed alpha
Helix 70	AH7	B	759	770	Right-handed alpha
Helix 71	AH8	B	777	781	Right-handed 310
Helix 72	AH9	B	791	819	Right-handed alpha
Helix 73	AI1	B	824	826	Right-handed 310
Helix 74	AI2	B	835	844	Right-handed alpha
Helix 75	AI3	B	848	853	Right-handed alpha
Helix 76	AI4	B	907	918	Right-handed alpha

There are 20 sheets in PDB entry 8C9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	548	554	parallel
Strand 3	A	578	584	parallel
Strand 4	A	430	432	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	153	154	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	177	187	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	450	451	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	288	first strand
Strand 2	A	251	257	anti-parallel
Strand 3	A	261	265	anti-parallel
Strand 4	A	226	232	parallel
Strand 5	A	199	217	anti-parallel
Strand 6	A	296	298	anti-parallel
Strand 7	A	305	310	anti-parallel
Strand 8	A	243	246	parallel
Strand 9	A	323	325	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	288	first strand
Strand 2	A	251	257	anti-parallel
Strand 3	A	261	265	anti-parallel
Strand 4	A	226	232	parallel
Strand 5	A	199	217	anti-parallel
Strand 6	A	383	396	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	523	524	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	473	first strand
Strand 2	A	465	466	anti-parallel
Strand 3	A	518	519	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	588	first strand
Strand 2	A	630	631	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	860	first strand
Strand 2	A	828	834	parallel
Strand 3	A	875	881	anti-parallel
Strand 4	A	870	871	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	885	886	first strand
Strand 2	A	893	894	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	153	154	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	177	187	anti-parallel
Strand 3	B	404	414	anti-parallel
Strand 4	B	449	451	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	288	first strand
Strand 2	B	251	257	anti-parallel
Strand 3	B	260	265	anti-parallel
Strand 4	B	226	232	parallel
Strand 5	B	199	217	anti-parallel
Strand 6	B	296	298	anti-parallel
Strand 7	B	305	310	anti-parallel
Strand 8	B	243	246	parallel
Strand 9	B	323	325	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	288	first strand
Strand 2	B	251	257	anti-parallel
Strand 3	B	260	265	anti-parallel
Strand 4	B	226	232	parallel
Strand 5	B	199	217	anti-parallel
Strand 6	B	383	396	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	432	first strand
Strand 2	B	580	584	parallel
Strand 3	B	551	554	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	523	524	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	473	first strand
Strand 2	B	465	466	anti-parallel
Strand 3	B	518	519	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	588	first strand
Strand 2	B	630	631	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	860	first strand
Strand 2	B	828	834	parallel
Strand 3	B	875	881	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	885	886	first strand
Strand 2	B	893	894	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C9G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C9G