Analysis of interatomic Contacts of Structural Units in PDB entry:
8C9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C9T entry

There are 4 chains in PDB entry 8C9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PRO 224
B
 SER 4PRO 224
C
 SER 4HIS 231
D
 GLU 3LEU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8C9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 20Right-handed alpha
Helix 2
AA2
A
23 36Right-handed alpha
Helix 3
AA3
A
44 59Right-handed alpha
Helix 4
AA4
A
71 79Right-handed alpha
Helix 5
AA5
A
93 107Right-handed alpha
Helix 6
AA6
A
119 130Right-handed alpha
Helix 7
AA7
A
143 145Right-handed 310
Helix 8
AA8
A
146 157Right-handed alpha
Helix 9
AA9
A
170 177Right-handed 310
Helix 10
AB1
A
182 198Right-handed alpha
Helix 11
AB2
B
5 20Right-handed alpha
Helix 12
AB3
B
23 36Right-handed alpha
Helix 13
AB4
B
44 59Right-handed alpha
Helix 14
AB5
B
71 79Right-handed alpha
Helix 15
AB6
B
93 107Right-handed alpha
Helix 16
AB7
B
119 130Right-handed alpha
Helix 17
AB8
B
143 145Right-handed 310
Helix 18
AB9
B
146 157Right-handed alpha
Helix 19
AC1
B
170 177Right-handed 310
Helix 20
AC2
B
182 198Right-handed alpha
Helix 21
AC3
C
5 20Right-handed alpha
Helix 22
AC4
C
23 36Right-handed alpha
Helix 23
AC5
C
44 59Right-handed alpha
Helix 24
AC6
C
71 79Right-handed alpha
Helix 25
AC7
C
93 107Right-handed alpha
Helix 26
AC8
C
119 129Right-handed alpha
Helix 27
AC9
C
143 145Right-handed 310
Helix 28
AD1
C
146 157Right-handed alpha
Helix 29
AD2
C
170 177Right-handed 310
Helix 30
AD3
C
182 198Right-handed alpha
Helix 31
AD4
D
4 20Right-handed alpha
Helix 32
AD5
D
23 37Right-handed alpha
Helix 33
AD6
D
44 59Right-handed alpha
Helix 34
AD7
D
71 80Right-handed alpha
Helix 35
AD8
D
93 107Right-handed alpha
Helix 36
AD9
D
119 131Right-handed alpha
Helix 37
AE1
D
143 145Right-handed 310
Helix 38
AE2
D
146 157Right-handed alpha
Helix 39
AE3
D
170 177Right-handed 310
Helix 40
AE4
D
182 198Right-handed alpha
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There are 2 sheets in PDB entry 8C9T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
86 91parallel
Strand 3
A
62 66parallel
Strand 4
A
137 140parallel
Strand 5
A
163 167parallel
Strand 6
A
215 222anti-parallel
Strand 7
A
201 209anti-parallel
Strand 8
D
201 209anti-parallel
Strand 9
D
215 222anti-parallel
Strand 10
D
158 167anti-parallel
Strand 11
D
135 140parallel
Strand 12
D
62 66parallel
Strand 13
D
86 91parallel
Strand 14
D
113 117parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
86 91parallel
Strand 3
B
62 66parallel
Strand 4
B
135 140parallel
Strand 5
B
158 167parallel
Strand 6
B
215 222anti-parallel
Strand 7
B
201 209anti-parallel
Strand 8
C
201 209anti-parallel
Strand 9
C
215 222anti-parallel
Strand 10
C
158 167anti-parallel
Strand 11
C
135 140parallel
Strand 12
C
62 66parallel
Strand 13
C
86 91parallel
Strand 14
C
113 117parallel
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