Analysis of interatomic Contacts of Structural Units in PDB entry:
8CAD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CAD entry

There are 6 chains in PDB entry 8CAD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 31	THR 695
B	THR 31	THR 695
C	THR 31	THR 695
D	THR 31	THR 695
E	THR 31	THR 695
F	THR 31	THR 695

There are168 helices in PDB entry 8CAD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	42	Right-handed alpha
Helix 2	AA2	A	52	62	Right-handed alpha
Helix 3	AA3	A	67	71	Right-handed 310
Helix 4	AA4	A	73	87	Right-handed alpha
Helix 5	AA5	A	100	116	Right-handed alpha
Helix 6	AA6	A	119	133	Right-handed alpha
Helix 7	AA7	A	135	149	Right-handed alpha
Helix 8	AA8	A	150	154	Right-handed 310
Helix 9	AA9	A	160	165	Right-handed alpha
Helix 10	AB1	A	166	169	Right-handed 310
Helix 11	AB2	A	171	184	Right-handed alpha
Helix 12	AB3	A	222	227	Right-handed alpha
Helix 13	AB4	A	228	242	Right-handed alpha
Helix 14	AB5	A	249	254	Right-handed alpha
Helix 15	AB6	A	256	279	Right-handed alpha
Helix 16	AB7	A	321	344	Right-handed alpha
Helix 17	AB8	A	358	360	Right-handed 310
Helix 18	AB9	A	361	371	Right-handed alpha
Helix 19	AC1	A	383	394	Right-handed alpha
Helix 20	AC2	A	412	416	Right-handed 310
Helix 21	AC3	A	419	422	Right-handed 310
Helix 22	AC4	A	423	443	Right-handed alpha
Helix 23	AC5	A	542	547	Right-handed alpha
Helix 24	AC6	A	548	550	Right-handed 310
Helix 25	AC7	A	572	574	Right-handed 310
Helix 26	AC8	A	583	594	Right-handed alpha
Helix 27	AC9	A	615	617	Right-handed 310
Helix 28	AD1	A	673	678	Right-handed 310
Helix 29	AD2	B	32	42	Right-handed alpha
Helix 30	AD3	B	52	62	Right-handed alpha
Helix 31	AD4	B	67	71	Right-handed 310
Helix 32	AD5	B	73	87	Right-handed alpha
Helix 33	AD6	B	100	116	Right-handed alpha
Helix 34	AD7	B	119	133	Right-handed alpha
Helix 35	AD8	B	135	149	Right-handed alpha
Helix 36	AD9	B	150	154	Right-handed 310
Helix 37	AE1	B	160	165	Right-handed alpha
Helix 38	AE2	B	166	169	Right-handed 310
Helix 39	AE3	B	171	184	Right-handed alpha
Helix 40	AE4	B	222	227	Right-handed alpha
Helix 41	AE5	B	228	242	Right-handed alpha
Helix 42	AE6	B	249	254	Right-handed alpha
Helix 43	AE7	B	256	279	Right-handed alpha
Helix 44	AE8	B	321	344	Right-handed alpha
Helix 45	AE9	B	358	360	Right-handed 310
Helix 46	AF1	B	361	371	Right-handed alpha
Helix 47	AF2	B	383	394	Right-handed alpha
Helix 48	AF3	B	412	416	Right-handed 310
Helix 49	AF4	B	419	422	Right-handed 310
Helix 50	AF5	B	423	444	Right-handed alpha
Helix 51	AF6	B	542	547	Right-handed alpha
Helix 52	AF7	B	548	550	Right-handed 310
Helix 53	AF8	B	572	574	Right-handed 310
Helix 54	AF9	B	583	594	Right-handed alpha
Helix 55	AG1	B	615	617	Right-handed 310
Helix 56	AG2	B	673	678	Right-handed 310
Helix 57	AG3	C	32	42	Right-handed alpha
Helix 58	AG4	C	52	62	Right-handed alpha
Helix 59	AG5	C	67	71	Right-handed 310
Helix 60	AG6	C	73	87	Right-handed alpha
Helix 61	AG7	C	100	116	Right-handed alpha
Helix 62	AG8	C	119	133	Right-handed alpha
Helix 63	AG9	C	135	149	Right-handed alpha
Helix 64	AH1	C	150	154	Right-handed 310
Helix 65	AH2	C	160	165	Right-handed alpha
Helix 66	AH3	C	166	169	Right-handed 310
Helix 67	AH4	C	171	184	Right-handed alpha
Helix 68	AH5	C	222	227	Right-handed alpha
Helix 69	AH6	C	228	242	Right-handed alpha
Helix 70	AH7	C	249	254	Right-handed alpha
Helix 71	AH8	C	256	279	Right-handed alpha
Helix 72	AH9	C	321	344	Right-handed alpha
Helix 73	AI1	C	358	360	Right-handed 310
Helix 74	AI2	C	361	371	Right-handed alpha
Helix 75	AI3	C	383	394	Right-handed alpha
Helix 76	AI4	C	412	416	Right-handed 310
Helix 77	AI5	C	419	422	Right-handed 310
Helix 78	AI6	C	423	443	Right-handed alpha
Helix 79	AI7	C	542	547	Right-handed alpha
Helix 80	AI8	C	548	550	Right-handed 310
Helix 81	AI9	C	572	574	Right-handed 310
Helix 82	AJ1	C	583	594	Right-handed alpha
Helix 83	AJ2	C	615	617	Right-handed 310
Helix 84	AJ3	C	673	678	Right-handed 310
Helix 85	AJ4	D	32	42	Right-handed alpha
Helix 86	AJ5	D	52	62	Right-handed alpha
Helix 87	AJ6	D	67	71	Right-handed 310
Helix 88	AJ7	D	73	87	Right-handed alpha
Helix 89	AJ8	D	100	116	Right-handed alpha
Helix 90	AJ9	D	119	133	Right-handed alpha
Helix 91	AK1	D	135	149	Right-handed alpha
Helix 92	AK2	D	150	154	Right-handed 310
Helix 93	AK3	D	160	165	Right-handed alpha
Helix 94	AK4	D	166	169	Right-handed 310
Helix 95	AK5	D	171	184	Right-handed alpha
Helix 96	AK6	D	222	227	Right-handed alpha
Helix 97	AK7	D	228	242	Right-handed alpha
Helix 98	AK8	D	249	254	Right-handed alpha
Helix 99	AK9	D	256	279	Right-handed alpha
Helix 100	AL1	D	321	344	Right-handed alpha
Helix 101	AL2	D	358	360	Right-handed 310
Helix 102	AL3	D	361	371	Right-handed alpha
Helix 103	AL4	D	383	394	Right-handed alpha
Helix 104	AL5	D	412	416	Right-handed 310
Helix 105	AL6	D	419	422	Right-handed 310
Helix 106	AL7	D	423	443	Right-handed alpha
Helix 107	AL8	D	542	547	Right-handed alpha
Helix 108	AL9	D	548	550	Right-handed 310
Helix 109	AM1	D	572	574	Right-handed 310
Helix 110	AM2	D	583	594	Right-handed alpha
Helix 111	AM3	D	615	617	Right-handed 310
Helix 112	AM4	D	673	678	Right-handed 310
Helix 113	AM5	E	32	42	Right-handed alpha
Helix 114	AM6	E	52	62	Right-handed alpha
Helix 115	AM7	E	67	71	Right-handed 310
Helix 116	AM8	E	73	87	Right-handed alpha
Helix 117	AM9	E	100	116	Right-handed alpha
Helix 118	AN1	E	119	133	Right-handed alpha
Helix 119	AN2	E	135	149	Right-handed alpha
Helix 120	AN3	E	150	154	Right-handed 310
Helix 121	AN4	E	160	165	Right-handed alpha
Helix 122	AN5	E	166	169	Right-handed 310
Helix 123	AN6	E	171	184	Right-handed alpha
Helix 124	AN7	E	222	227	Right-handed alpha
Helix 125	AN8	E	228	242	Right-handed alpha
Helix 126	AN9	E	249	254	Right-handed alpha
Helix 127	AO1	E	256	279	Right-handed alpha
Helix 128	AO2	E	321	344	Right-handed alpha
Helix 129	AO3	E	358	360	Right-handed 310
Helix 130	AO4	E	361	371	Right-handed alpha
Helix 131	AO5	E	383	394	Right-handed alpha
Helix 132	AO6	E	412	416	Right-handed 310
Helix 133	AO7	E	419	422	Right-handed 310
Helix 134	AO8	E	423	443	Right-handed alpha
Helix 135	AO9	E	542	547	Right-handed alpha
Helix 136	AP1	E	548	550	Right-handed 310
Helix 137	AP2	E	572	574	Right-handed 310
Helix 138	AP3	E	583	594	Right-handed alpha
Helix 139	AP4	E	615	617	Right-handed 310
Helix 140	AP5	E	673	678	Right-handed 310
Helix 141	AP6	F	32	42	Right-handed alpha
Helix 142	AP7	F	52	62	Right-handed alpha
Helix 143	AP8	F	67	71	Right-handed 310
Helix 144	AP9	F	73	87	Right-handed alpha
Helix 145	AQ1	F	100	116	Right-handed alpha
Helix 146	AQ2	F	119	133	Right-handed alpha
Helix 147	AQ3	F	135	149	Right-handed alpha
Helix 148	AQ4	F	150	154	Right-handed 310
Helix 149	AQ5	F	160	165	Right-handed alpha
Helix 150	AQ6	F	166	169	Right-handed 310
Helix 151	AQ7	F	171	184	Right-handed alpha
Helix 152	AQ8	F	222	227	Right-handed alpha
Helix 153	AQ9	F	228	242	Right-handed alpha
Helix 154	AR1	F	249	254	Right-handed alpha
Helix 155	AR2	F	256	279	Right-handed alpha
Helix 156	AR3	F	321	344	Right-handed alpha
Helix 157	AR4	F	358	360	Right-handed 310
Helix 158	AR5	F	361	371	Right-handed alpha
Helix 159	AR6	F	383	394	Right-handed alpha
Helix 160	AR7	F	412	416	Right-handed 310
Helix 161	AR8	F	419	422	Right-handed 310
Helix 162	AR9	F	423	443	Right-handed alpha
Helix 163	AS1	F	542	547	Right-handed alpha
Helix 164	AS2	F	548	550	Right-handed 310
Helix 165	AS3	F	572	574	Right-handed 310
Helix 166	AS4	F	583	594	Right-handed alpha
Helix 167	AS5	F	615	617	Right-handed 310
Helix 168	AS6	F	673	678	Right-handed 310

There are 36 sheets in PDB entry 8CAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	202	204	anti-parallel
Strand 3	A	498	507	parallel
Strand 4	A	468	477	anti-parallel
Strand 5	A	683	692	parallel
Strand 6	A	626	636	anti-parallel
Strand 7	A	522	532	anti-parallel
Strand 8	A	551	560	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	315	316	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	353	355	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	407	408	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	464	first strand
Strand 2	A	511	517	anti-parallel
Strand 3	A	567	570	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	578	first strand
Strand 2	A	612	613	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	202	204	anti-parallel
Strand 3	B	498	507	parallel
Strand 4	B	468	477	anti-parallel
Strand 5	B	683	692	parallel
Strand 6	B	626	636	anti-parallel
Strand 7	B	522	532	anti-parallel
Strand 8	B	551	560	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	315	316	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	347	first strand
Strand 2	B	353	355	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	407	408	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	464	first strand
Strand 2	B	511	517	anti-parallel
Strand 3	B	567	570	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	578	first strand
Strand 2	B	612	613	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	202	204	anti-parallel
Strand 3	C	498	507	parallel
Strand 4	C	468	477	anti-parallel
Strand 5	C	683	692	parallel
Strand 6	C	626	636	anti-parallel
Strand 7	C	522	532	anti-parallel
Strand 8	C	551	560	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	315	316	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	347	first strand
Strand 2	C	353	355	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	407	408	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	464	first strand
Strand 2	C	511	517	anti-parallel
Strand 3	C	567	570	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	577	578	first strand
Strand 2	C	612	613	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	199	first strand
Strand 2	D	202	204	anti-parallel
Strand 3	D	498	507	parallel
Strand 4	D	468	477	anti-parallel
Strand 5	D	683	692	parallel
Strand 6	D	626	636	anti-parallel
Strand 7	D	522	532	anti-parallel
Strand 8	D	551	560	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	292	first strand
Strand 2	D	315	316	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	347	first strand
Strand 2	D	353	355	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	407	408	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	464	first strand
Strand 2	D	511	517	anti-parallel
Strand 3	D	567	570	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	577	578	first strand
Strand 2	D	612	613	parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	199	first strand
Strand 2	E	202	204	anti-parallel
Strand 3	E	498	507	parallel
Strand 4	E	468	477	anti-parallel
Strand 5	E	683	692	parallel
Strand 6	E	626	636	anti-parallel
Strand 7	E	522	532	anti-parallel
Strand 8	E	551	560	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	292	first strand
Strand 2	E	315	316	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	345	347	first strand
Strand 2	E	353	355	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	400	401	first strand
Strand 2	E	407	408	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	458	464	first strand
Strand 2	E	511	517	anti-parallel
Strand 3	E	567	570	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	577	578	first strand
Strand 2	E	612	613	parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	196	199	first strand
Strand 2	F	202	204	anti-parallel
Strand 3	F	498	507	parallel
Strand 4	F	468	477	anti-parallel
Strand 5	F	683	692	parallel
Strand 6	F	626	636	anti-parallel
Strand 7	F	522	532	anti-parallel
Strand 8	F	551	560	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	292	first strand
Strand 2	F	315	316	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	345	347	first strand
Strand 2	F	353	355	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	400	401	first strand
Strand 2	F	407	408	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	458	464	first strand
Strand 2	F	511	517	anti-parallel
Strand 3	F	567	570	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	577	578	first strand
Strand 2	F	612	613	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CAD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CAD