Analysis of interatomic Contacts of Structural Units in PDB entry:
8CAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CAP entry

There are 4 chains in PDB entry 8CAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 413ASN 692
B
 GLU 413ASN 692
C
 GLU 413ASN 692
E
 GLU 413ASN 692
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8CAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
481 497Right-handed alpha
Helix 2
AA2
A
520 528Right-handed 310
Helix 3
AA3
A
540 557Right-handed alpha
Helix 4
AA4
A
578 592Right-handed alpha
Helix 5
AA5
A
646 658Right-handed alpha
Helix 6
AA6
A
670 685Right-handed alpha
Helix 7
AA7
B
481 501Right-handed alpha
Helix 8
AA8
B
520 525Right-handed 310
Helix 9
AA9
B
540 557Right-handed alpha
Helix 10
AB1
B
578 592Right-handed alpha
Helix 11
AB2
B
646 659Right-handed alpha
Helix 12
AB3
B
670 685Right-handed alpha
Helix 13
AB4
C
481 501Right-handed alpha
Helix 14
AB5
C
520 525Right-handed 310
Helix 15
AB6
C
540 557Right-handed alpha
Helix 16
AB7
C
578 592Right-handed alpha
Helix 17
AB8
C
646 659Right-handed alpha
Helix 18
AB9
C
670 685Right-handed alpha
Helix 19
AC1
E
481 501Right-handed alpha
Helix 20
AC2
E
520 525Right-handed 310
Helix 21
AC3
E
540 557Right-handed alpha
Helix 22
AC4
E
578 592Right-handed alpha
Helix 23
AC5
E
646 659Right-handed alpha
Helix 24
AC6
E
670 684Right-handed alpha
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There are 9 sheets in PDB entry 8CAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 462first strand
Strand 2
A
445 449anti-parallel
Strand 3
A
510 518anti-parallel
Strand 4
A
414 422anti-parallel
Strand 5
A
427 433anti-parallel
Strand 6
A
472 474anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 462first strand
Strand 2
A
445 449anti-parallel
Strand 3
A
510 518anti-parallel
Strand 4
A
414 422anti-parallel
Strand 5
A
427 433anti-parallel
Strand 6
A
477 478anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
641 642first strand
Strand 2
A
597 603parallel
Strand 3
A
565 572parallel
Strand 4
A
530 536parallel
Strand 5
A
665 668parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 462first strand
Strand 2
B
445 449anti-parallel
Strand 3
B
510 518anti-parallel
Strand 4
B
414 422anti-parallel
Strand 5
B
427 433anti-parallel
Strand 6
B
472 478anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
597 598first strand
Strand 2
B
565 572parallel
Strand 3
B
601 603parallel
Strand 4
B
641 642parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
597 598first strand
Strand 2
B
565 572parallel
Strand 3
B
530 536parallel
Strand 4
B
663 668parallel
Strand 5
B
688 690parallel
Strand 6
C
457 462parallel
Strand 7
C
445 449anti-parallel
Strand 8
C
510 518anti-parallel
Strand 9
C
414 423anti-parallel
Strand 10
C
427 433anti-parallel
Strand 11
C
472 478anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
641 642first strand
Strand 2
C
597 603parallel
Strand 3
C
565 572parallel
Strand 4
C
530 536parallel
Strand 5
C
663 668parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
459 462first strand
Strand 2
E
445 449anti-parallel
Strand 3
E
510 518anti-parallel
Strand 4
E
414 423anti-parallel
Strand 5
E
427 433anti-parallel
Strand 6
E
472 478anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
641 642first strand
Strand 2
E
597 603parallel
Strand 3
E
565 572parallel
Strand 4
E
530 536parallel
Strand 5
E
663 668parallel
Strand 6
E
688 690parallel
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