Analysis of interatomic Contacts of Structural Units in PDB entry:
8CAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CAR entry

There is 1 chain in PDB entry 8CAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1THR 689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8CAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
56 74Right-handed alpha
Helix 3
AA3
A
83 91Right-handed alpha
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
112 122Right-handed alpha
Helix 6
AA6
A
259 273Right-handed alpha
Helix 7
AA7
A
328 340Right-handed alpha
Helix 8
AA8
A
401 416Right-handed alpha
Helix 9
AA9
A
430 437Right-handed 310
Helix 10
AB1
A
445 451Right-handed alpha
Helix 11
AB2
A
457 469Right-handed alpha
Helix 12
AB3
A
483 509Right-handed alpha
Helix 13
AB4
A
527 537Right-handed alpha
Helix 14
AB5
A
539 558Right-handed alpha
Helix 15
AB6
A
569 584Right-handed alpha
Helix 16
AB7
A
586 594Right-handed alpha
Helix 17
AB8
A
612 628Right-handed alpha
Helix 18
AB9
A
629 646Right-handed alpha
Helix 19
AC1
A
646 651Right-handed alpha
Helix 20
AC2
A
664 669Right-handed alpha
Helix 21
AC3
A
674 689Right-handed alpha
Helix 22
AC4
A
691 718Right-handed alpha
Helix 23
AC5
A
722 727Right-handed 310
Helix 24
AC6
A
731 747Right-handed alpha
Helix 25
AC7
A
749 766Right-handed alpha
Helix 26
AC8
A
767 769Right-handed 310
Helix 27
AC9
A
777 792Right-handed alpha
Helix 28
AD1
A
794 812Right-handed alpha
Helix 29
AD2
A
836 848Right-handed alpha
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There are 6 sheets in PDB entry 8CAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
47 53anti-parallel
Strand 6
A
144 150anti-parallel
Strand 7
A
136 137anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
163 168anti-parallel
Strand 3
A
174 176anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
163 168anti-parallel
Strand 3
A
517 518anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
292 295anti-parallel
Strand 4
A
286 289anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
364 365anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 815first strand
Strand 2
A
818 820anti-parallel
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