Analysis of interatomic Contacts of Structural Units in PDB entry:
8CAZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CAZ entry

There are 12 chains in PDB entry 8CAZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
4	GLY 55	ILE 66
A	C 930	U 965
A	A 968	G 1206
A	C 1208	C 1389
B	SER 5	GLN 227
C	GLY 2	ILE 207
G	PRO 2	TYR 154
I	ASN 4	ARG 130
J	ARG 5	LEU 102
M	ALA 2	ILE 116
N	ALA 2	TRP 101
S	PRO 2	ALA 84

There are 49 helices in PDB entry 8CAZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	4	55	64	Right-handed alpha
Helix 2	AA2	B	7	13	Right-handed alpha
Helix 3	AA3	B	21	23	Right-handed 310
Helix 4	AA4	B	24	28	Right-handed 310
Helix 5	AA5	B	42	63	Right-handed alpha
Helix 6	AA6	B	81	86	Right-handed alpha
Helix 7	AA7	B	103	123	Right-handed alpha
Helix 8	AA8	B	124	128	Right-handed 310
Helix 9	AA9	B	134	149	Right-handed alpha
Helix 10	AB1	B	150	152	Right-handed 310
Helix 11	AB2	B	169	180	Right-handed alpha
Helix 12	AB3	B	206	227	Right-handed alpha
Helix 13	AB4	C	6	11	Right-handed alpha
Helix 14	AB5	C	25	47	Right-handed alpha
Helix 15	AB6	C	72	78	Right-handed alpha
Helix 16	AB7	C	81	96	Right-handed alpha
Helix 17	AB8	C	108	111	Right-handed 310
Helix 18	AB9	C	112	126	Right-handed alpha
Helix 19	AC1	C	129	144	Right-handed alpha
Helix 20	AC2	C	156	160	Right-handed 310
Helix 21	AC3	G	20	31	Right-handed alpha
Helix 22	AC4	G	35	51	Right-handed alpha
Helix 23	AC5	G	58	68	Right-handed alpha
Helix 24	AC6	G	92	111	Right-handed alpha
Helix 25	AC7	G	115	130	Right-handed alpha
Helix 26	AC8	G	132	148	Right-handed alpha
Helix 27	AC9	G	149	152	Right-handed 310
Helix 28	AD1	I	35	39	Right-handed alpha
Helix 29	AD2	I	41	56	Right-handed alpha
Helix 30	AD3	I	71	91	Right-handed alpha
Helix 31	AD4	I	94	101	Right-handed alpha
Helix 32	AD5	J	14	32	Right-handed alpha
Helix 33	AD6	J	80	88	Right-handed alpha
Helix 34	AD7	M	14	19	Right-handed alpha
Helix 35	AD8	M	20	22	Right-handed 310
Helix 36	AD9	M	26	38	Right-handed alpha
Helix 37	AE1	M	49	61	Right-handed alpha
Helix 38	AE2	M	65	84	Right-handed alpha
Helix 39	AE3	M	85	94	Right-handed alpha
Helix 40	AE4	M	106	111	Right-handed alpha
Helix 41	AE5	N	3	33	Right-handed alpha
Helix 42	AE6	N	37	51	Right-handed alpha
Helix 43	AE7	N	52	60	Right-handed 310
Helix 44	AE8	N	81	90	Right-handed alpha
Helix 45	AE9	S	4	8	Right-handed 310
Helix 46	AF1	S	12	26	Right-handed alpha
Helix 47	AF2	S	41	45	Right-handed 310
Helix 48	AF3	S	63	67	Right-handed 310
Helix 49	AF4	S	70	75	Right-handed 310

There are 11 sheets in PDB entry 8CAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	31	34	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	67	70	parallel
Strand 3	B	160	164	parallel
Strand 4	B	183	187	parallel
Strand 5	B	198	201	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	52	58	parallel
Strand 3	C	65	70	anti-parallel
Strand 4	C	100	105	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	171	first strand
Strand 2	C	148	155	anti-parallel
Strand 3	C	195	206	anti-parallel
Strand 4	C	180	190	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	79	first strand
Strand 2	G	84	90	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	12	first strand
Strand 2	I	15	23	anti-parallel
Strand 3	I	61	68	anti-parallel
Strand 4	I	28	30	parallel
Strand 5	I	33	34	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	52	first strand
Strand 2	J	62	77	anti-parallel
Strand 3	J	6	12	anti-parallel
Strand 4	J	96	101	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	52	first strand
Strand 2	J	62	77	anti-parallel
Strand 3	N	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	4	first strand
Strand 2	M	7	8	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	73	74	first strand
Strand 2	N	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	31	33	first strand
Strand 2	S	48	52	parallel
Strand 3	S	57	61	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CAZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CAZ