Analysis of interatomic Contacts of Structural Units in PDB entry:
8CB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CB3 entry

There are 3 chains in PDB entry 8CB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 174
B
 GLU 2LYS 174
C
 PRO 3LEU 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 8CB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 32Right-handed alpha
Helix 2
AA2
A
48 58Right-handed alpha
Helix 3
AA3
A
60 74Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
108 116Right-handed alpha
Helix 6
AA6
A
117 120Right-handed 310
Helix 7
AA7
A
130 134Right-handed 310
Helix 8
AA8
A
136 148Right-handed alpha
Helix 9
AA9
A
158 173Right-handed alpha
Helix 10
AB1
B
23 32Right-handed alpha
Helix 11
AB2
B
48 58Right-handed alpha
Helix 12
AB3
B
60 74Right-handed alpha
Helix 13
AB4
B
100 104Right-handed 310
Helix 14
AB5
B
108 116Right-handed alpha
Helix 15
AB6
B
117 120Right-handed 310
Helix 16
AB7
B
136 148Right-handed alpha
Helix 17
AB8
B
158 172Right-handed alpha
Helix 18
AB9
C
23 32Right-handed alpha
Helix 19
AC1
C
48 58Right-handed alpha
Helix 20
AC2
C
60 74Right-handed alpha
Helix 21
AC3
C
100 104Right-handed 310
Helix 22
AC4
C
106 108Right-handed 310
Helix 23
AC5
C
109 116Right-handed alpha
Helix 24
AC6
C
117 120Right-handed 310
Helix 25
AC7
C
130 134Right-handed 310
Helix 26
AC8
C
136 148Right-handed alpha
Helix 27
AC9
C
158 172Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8CB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
151 156parallel
Strand 4
A
122 125parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
92 96parallel
Strand 3
A
81 85anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
151 156parallel
Strand 4
B
122 125parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
92 97parallel
Strand 3
B
81 85anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
17 21anti-parallel
Strand 3
C
151 156parallel
Strand 4
C
122 125parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 39first strand
Strand 2
C
92 96parallel
Strand 3
C
81 85anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il