Analysis of interatomic Contacts of Structural Units in PDB entry:
8CBB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CBB entry

There are 4 chains in PDB entry 8CBB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	ALA 361
B	GLU 5	LYS 362
C	ASP 6	ALA 361
D	ASP 6	ALA 361

There are 66 helices in PDB entry 8CBB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	40	Right-handed alpha
Helix 2	AA2	A	60	71	Right-handed alpha
Helix 3	AA3	A	85	87	Right-handed 310
Helix 4	AA4	A	88	104	Right-handed alpha
Helix 5	AA5	A	116	123	Right-handed alpha
Helix 6	AA6	A	126	128	Right-handed 310
Helix 7	AA7	A	129	147	Right-handed alpha
Helix 8	AA8	A	181	191	Right-handed alpha
Helix 9	AA9	A	202	220	Right-handed alpha
Helix 10	AB1	A	223	227	Right-handed 310
Helix 11	AB2	A	240	264	Right-handed alpha
Helix 12	AB3	A	280	306	Right-handed alpha
Helix 13	AB4	A	310	326	Right-handed alpha
Helix 14	AB5	A	334	338	Right-handed 310
Helix 15	AB6	A	339	354	Right-handed alpha
Helix 16	AB7	A	355	358	Right-handed 310
Helix 17	AB8	B	22	40	Right-handed alpha
Helix 18	AB9	B	60	71	Right-handed alpha
Helix 19	AC1	B	85	87	Right-handed 310
Helix 20	AC2	B	88	103	Right-handed alpha
Helix 21	AC3	B	116	124	Right-handed alpha
Helix 22	AC4	B	129	147	Right-handed alpha
Helix 23	AC5	B	181	191	Right-handed alpha
Helix 24	AC6	B	202	220	Right-handed alpha
Helix 25	AC7	B	223	227	Right-handed 310
Helix 26	AC8	B	240	263	Right-handed alpha
Helix 27	AC9	B	264	272	Right-handed alpha
Helix 28	AD1	B	283	288	Right-handed alpha
Helix 29	AD2	B	293	306	Right-handed alpha
Helix 30	AD3	B	310	326	Right-handed alpha
Helix 31	AD4	B	334	338	Right-handed 310
Helix 32	AD5	B	339	354	Right-handed alpha
Helix 33	AD6	B	355	358	Right-handed 310
Helix 34	AD7	C	22	40	Right-handed alpha
Helix 35	AD8	C	60	71	Right-handed alpha
Helix 36	AD9	C	85	87	Right-handed 310
Helix 37	AE1	C	88	103	Right-handed alpha
Helix 38	AE2	C	116	124	Right-handed alpha
Helix 39	AE3	C	126	128	Right-handed 310
Helix 40	AE4	C	129	148	Right-handed alpha
Helix 41	AE5	C	181	191	Right-handed alpha
Helix 42	AE6	C	202	220	Right-handed alpha
Helix 43	AE7	C	223	227	Right-handed 310
Helix 44	AE8	C	240	263	Right-handed alpha
Helix 45	AE9	C	264	273	Right-handed alpha
Helix 46	AF1	C	278	291	Right-handed alpha
Helix 47	AF2	C	293	306	Right-handed alpha
Helix 48	AF3	C	310	326	Right-handed alpha
Helix 49	AF4	C	334	338	Right-handed 310
Helix 50	AF5	C	339	354	Right-handed alpha
Helix 51	AF6	C	355	358	Right-handed 310
Helix 52	AF7	D	22	40	Right-handed alpha
Helix 53	AF8	D	60	71	Right-handed alpha
Helix 54	AF9	D	85	87	Right-handed 310
Helix 55	AG1	D	88	104	Right-handed alpha
Helix 56	AG2	D	116	124	Right-handed alpha
Helix 57	AG3	D	126	128	Right-handed 310
Helix 58	AG4	D	129	147	Right-handed alpha
Helix 59	AG5	D	181	191	Right-handed alpha
Helix 60	AG6	D	202	220	Right-handed alpha
Helix 61	AG7	D	240	263	Right-handed alpha
Helix 62	AG8	D	281	306	Right-handed alpha
Helix 63	AG9	D	310	324	Right-handed alpha
Helix 64	AH1	D	334	338	Right-handed 310
Helix 65	AH2	D	339	354	Right-handed alpha
Helix 66	AH3	D	355	358	Right-handed 310

There are 12 sheets in PDB entry 8CBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	107	112	parallel
Strand 3	A	76	79	parallel
Strand 4	A	44	47	parallel
Strand 5	A	8	12	parallel
Strand 6	A	329	333	parallel
Strand 7	A	230	237	parallel
Strand 8	A	307	309	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	107	112	parallel
Strand 3	A	175	178	parallel
Strand 4	A	195	197	parallel
Strand 5	A	230	237	parallel
Strand 6	A	307	309	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	158	163	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	107	112	parallel
Strand 3	B	76	79	parallel
Strand 4	B	44	47	parallel
Strand 5	B	8	12	parallel
Strand 6	B	329	333	parallel
Strand 7	B	230	237	parallel
Strand 8	B	307	309	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	107	112	parallel
Strand 3	B	175	178	parallel
Strand 4	B	195	197	parallel
Strand 5	B	230	237	parallel
Strand 6	B	307	309	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	159	163	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	107	112	parallel
Strand 3	C	76	79	parallel
Strand 4	C	44	47	parallel
Strand 5	C	8	12	parallel
Strand 6	C	329	333	parallel
Strand 7	C	230	237	parallel
Strand 8	C	307	309	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	107	112	parallel
Strand 3	C	175	178	parallel
Strand 4	C	195	197	parallel
Strand 5	C	230	237	parallel
Strand 6	C	307	309	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	159	163	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	107	112	parallel
Strand 3	D	76	79	parallel
Strand 4	D	44	47	parallel
Strand 5	D	8	12	parallel
Strand 6	D	329	333	parallel
Strand 7	D	230	237	parallel
Strand 8	D	307	309	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	107	112	parallel
Strand 3	D	175	178	parallel
Strand 4	D	195	197	parallel
Strand 5	D	230	237	parallel
Strand 6	D	307	309	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	158	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CBB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CBB