Analysis of interatomic Contacts of Structural Units in PDB entry:
8CBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CBC entry

There are 2 chains in PDB entry 8CBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7LEU 461
B
 GLY 9ALA 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8CBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 40Right-handed alpha
Helix 2
AA2
A
42 55Right-handed alpha
Helix 3
AA3
A
105 116Right-handed alpha
Helix 4
AA4
A
130 134Right-handed 310
Helix 5
AA5
A
158 176Right-handed alpha
Helix 6
AA6
A
201 219Right-handed alpha
Helix 7
AA7
A
234 246Right-handed alpha
Helix 8
AA8
A
247 249Right-handed 310
Helix 9
AA9
A
298 312Right-handed alpha
Helix 10
AB1
A
346 357Right-handed alpha
Helix 11
AB2
B
33 40Right-handed alpha
Helix 12
AB3
B
42 55Right-handed alpha
Helix 13
AB4
B
105 116Right-handed alpha
Helix 14
AB5
B
130 134Right-handed 310
Helix 15
AB6
B
158 176Right-handed alpha
Helix 16
AB7
B
201 219Right-handed alpha
Helix 17
AB8
B
234 240Right-handed alpha
Helix 18
AB9
B
241 246Right-handed alpha
Helix 19
AC1
B
247 249Right-handed 310
Helix 20
AC2
B
298 312Right-handed alpha
Helix 21
AC3
B
346 357Right-handed alpha
Helix 22
AC4
B
409 413Right-handed 310
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There are 7 sheets in PDB entry 8CBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
416 422anti-parallel
Strand 3
A
448 455anti-parallel
Strand 4
A
387 393anti-parallel
Strand 5
A
375 381anti-parallel
Strand 6
A
363 369anti-parallel
Strand 7
A
10 23anti-parallel
Strand 8
A
398 404parallel
Strand 9
A
439 444anti-parallel
Strand 10
A
434 436anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
64 68parallel
Strand 3
A
121 125parallel
Strand 4
A
182 184parallel
Strand 5
A
226 232parallel
Strand 6
A
254 258parallel
Strand 7
A
274 278parallel
Strand 8
A
317 319parallel
Strand 9
A
25 29parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 285first strand
Strand 2
A
329 330anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
332 337parallel
Strand 3
A
342 345anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 431first strand
Strand 2
B
416 422anti-parallel
Strand 3
B
448 455anti-parallel
Strand 4
B
387 393anti-parallel
Strand 5
B
375 381anti-parallel
Strand 6
B
363 369anti-parallel
Strand 7
B
10 23anti-parallel
Strand 8
B
398 404parallel
Strand 9
B
439 444anti-parallel
Strand 10
B
434 436anti-parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 345first strand
Strand 2
B
332 337anti-parallel
Strand 3
B
317 325parallel
Strand 4
B
274 278parallel
Strand 5
B
254 258parallel
Strand 6
B
226 232parallel
Strand 7
B
182 184parallel
Strand 8
B
121 126parallel
Strand 9
B
64 69parallel
Strand 10
B
25 29parallel
Strand 11
B
317 325parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 285first strand
Strand 2
B
329 330anti-parallel
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