Analysis of interatomic Contacts of Structural Units in PDB entry:
8CBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CBM entry

There are 7 chains in PDB entry 8CBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7PRO 261
B
 SER 7PRO 261
C
 SER 7PRO 261
D
 SER 7PRO 261
E
 THR 42THR 434
F
 ALA 92GLU 386
T
 G 1 A 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 8CBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 34Right-handed alpha
Helix 2
AA2
A
42 45Right-handed 310
Helix 3
AA3
A
46 55Right-handed alpha
Helix 4
AA4
A
67 83Right-handed alpha
Helix 5
AA5
A
110 139Right-handed alpha
Helix 6
AA6
A
155 159Right-handed 310
Helix 7
AA7
A
165 187Right-handed alpha
Helix 8
AA8
A
203 209Right-handed 310
Helix 9
AA9
A
210 220Right-handed alpha
Helix 10
AB1
A
229 243Right-handed alpha
Helix 11
AB2
B
21 33Right-handed alpha
Helix 12
AB3
B
42 45Right-handed 310
Helix 13
AB4
B
46 55Right-handed alpha
Helix 14
AB5
B
67 83Right-handed alpha
Helix 15
AB6
B
110 139Right-handed alpha
Helix 16
AB7
B
155 159Right-handed 310
Helix 17
AB8
B
165 187Right-handed alpha
Helix 18
AB9
B
203 208Right-handed alpha
Helix 19
AC1
B
210 221Right-handed alpha
Helix 20
AC2
B
229 243Right-handed alpha
Helix 21
AC3
C
20 33Right-handed alpha
Helix 22
AC4
C
46 55Right-handed alpha
Helix 23
AC5
C
67 83Right-handed alpha
Helix 24
AC6
C
110 138Right-handed alpha
Helix 25
AC7
C
155 159Right-handed 310
Helix 26
AC8
C
165 186Right-handed alpha
Helix 27
AC9
C
203 208Right-handed alpha
Helix 28
AD1
C
210 221Right-handed alpha
Helix 29
AD2
C
229 243Right-handed alpha
Helix 30
AD3
D
20 33Right-handed alpha
Helix 31
AD4
D
42 45Right-handed 310
Helix 32
AD5
D
46 55Right-handed alpha
Helix 33
AD6
D
67 83Right-handed alpha
Helix 34
AD7
D
110 122Right-handed alpha
Helix 35
AD8
D
122 137Right-handed alpha
Helix 36
AD9
D
155 159Right-handed 310
Helix 37
AE1
D
165 186Right-handed alpha
Helix 38
AE2
D
203 208Right-handed alpha
Helix 39
AE3
D
210 221Right-handed alpha
Helix 40
AE4
D
229 243Right-handed alpha
Helix 41
AE5
E
43 56Right-handed alpha
Helix 42
AE6
E
63 71Right-handed alpha
Helix 43
AE7
E
85 97Right-handed alpha
Helix 44
AE8
E
104 109Right-handed 310
Helix 45
AE9
E
143 151Right-handed alpha
Helix 46
AF1
E
153 158Right-handed alpha
Helix 47
AF2
E
171 178Right-handed alpha
Helix 48
AF3
E
186 194Right-handed alpha
Helix 49
AF4
E
195 209Right-handed alpha
Helix 50
AF5
E
216 231Right-handed alpha
Helix 51
AF6
E
234 247Right-handed alpha
Helix 52
AF7
E
250 262Right-handed alpha
Helix 53
AF8
E
262 268Right-handed alpha
Helix 54
AF9
E
274 286Right-handed alpha
Helix 55
AG1
E
291 300Right-handed alpha
Helix 56
AG2
E
302 314Right-handed alpha
Helix 57
AG3
E
316 332Right-handed alpha
Helix 58
AG4
E
343 353Right-handed alpha
Helix 59
AG5
E
355 370Right-handed alpha
Helix 60
AG6
E
371 381Right-handed alpha
Helix 61
AG7
E
389 397Right-handed alpha
Helix 62
AG8
E
400 418Right-handed alpha
Helix 63
AG9
E
423 431Right-handed alpha
Helix 64
AH1
F
93 105Right-handed alpha
Helix 65
AH2
F
113 123Right-handed alpha
Helix 66
AH3
F
125 168Right-handed alpha
Helix 67
AH4
F
171 176Right-handed 310
Helix 68
AH5
F
182 202Right-handed alpha
Helix 69
AH6
F
211 215Right-handed 310
Helix 70
AH7
F
216 236Right-handed alpha
Helix 71
AH8
F
252 263Right-handed alpha
Helix 72
AH9
F
264 269Right-handed alpha
Helix 73
AI1
F
277 282Right-handed alpha
Helix 74
AI2
F
320 330Right-handed alpha
Helix 75
AI3
F
337 342Right-handed alpha
Helix 76
AI4
F
352 365Right-handed alpha
Helix 77
AI5
F
368 374Right-handed alpha
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There are 11 sheets in PDB entry 8CBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
36 40parallel
Strand 3
A
12 16parallel
Strand 4
A
87 90parallel
Strand 5
A
148 153parallel
Strand 6
A
191 196parallel
Strand 7
A
250 251parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
107 108anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
36 40parallel
Strand 3
B
12 16parallel
Strand 4
B
87 90parallel
Strand 5
B
148 153parallel
Strand 6
B
191 196parallel
Strand 7
B
250 251parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
107 108anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
36 40parallel
Strand 3
C
12 16parallel
Strand 4
C
87 90parallel
Strand 5
C
148 153parallel
Strand 6
C
191 196parallel
Strand 7
C
250 251parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 102first strand
Strand 2
C
107 108anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 62first strand
Strand 2
D
36 41parallel
Strand 3
D
12 16parallel
Strand 4
D
87 90parallel
Strand 5
D
148 153parallel
Strand 6
D
191 196parallel
Strand 7
D
250 251parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 102first strand
Strand 2
D
107 108anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 101first strand
Strand 2
E
111 115anti-parallel
Strand 3
E
118 124anti-parallel
Strand 4
E
79 82parallel
Strand 5
E
59 62anti-parallel
Strand 6
E
159 160anti-parallel
Strand 7
E
166 167anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
126 127first strand
Strand 2
E
139 140anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
272 273first strand
Strand 2
F
242 246parallel
Strand 3
F
204 208parallel
Strand 4
F
306 310parallel
Strand 5
F
287 290parallel
Strand 6
F
332 334parallel
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