Analysis of interatomic Contacts of Structural Units in PDB entry:
8CBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CBO entry

There are 6 chains in PDB entry 8CBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7PRO 261
B
 SER 7PRO 261
C
 SER 7PRO 261
D
 SER 7PRO 261
E
 LYS 175LEU 385
T
 G 2 C 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8CBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 34Right-handed alpha
Helix 2
AA2
A
42 45Right-handed 310
Helix 3
AA3
A
46 55Right-handed alpha
Helix 4
AA4
A
67 83Right-handed alpha
Helix 5
AA5
A
110 138Right-handed alpha
Helix 6
AA6
A
156 161Right-handed alpha
Helix 7
AA7
A
165 186Right-handed alpha
Helix 8
AA8
A
203 208Right-handed 310
Helix 9
AA9
A
210 220Right-handed alpha
Helix 10
AB1
A
229 243Right-handed alpha
Helix 11
AB2
B
21 33Right-handed alpha
Helix 12
AB3
B
46 55Right-handed alpha
Helix 13
AB4
B
67 83Right-handed alpha
Helix 14
AB5
B
110 139Right-handed alpha
Helix 15
AB6
B
155 159Right-handed 310
Helix 16
AB7
B
165 186Right-handed alpha
Helix 17
AB8
B
203 208Right-handed 310
Helix 18
AB9
B
210 221Right-handed alpha
Helix 19
AC1
B
229 243Right-handed alpha
Helix 20
AC2
C
20 33Right-handed alpha
Helix 21
AC3
C
42 45Right-handed 310
Helix 22
AC4
C
46 55Right-handed alpha
Helix 23
AC5
C
67 83Right-handed alpha
Helix 24
AC6
C
110 122Right-handed alpha
Helix 25
AC7
C
122 137Right-handed alpha
Helix 26
AC8
C
156 161Right-handed alpha
Helix 27
AC9
C
165 186Right-handed alpha
Helix 28
AD1
C
210 221Right-handed alpha
Helix 29
AD2
C
229 243Right-handed alpha
Helix 30
AD3
D
21 33Right-handed alpha
Helix 31
AD4
D
46 55Right-handed alpha
Helix 32
AD5
D
67 83Right-handed alpha
Helix 33
AD6
D
110 138Right-handed alpha
Helix 34
AD7
D
155 159Right-handed 310
Helix 35
AD8
D
165 187Right-handed alpha
Helix 36
AD9
D
203 208Right-handed alpha
Helix 37
AE1
D
210 221Right-handed alpha
Helix 38
AE2
D
229 243Right-handed alpha
Helix 39
AE3
E
182 202Right-handed alpha
Helix 40
AE4
E
216 236Right-handed alpha
Helix 41
AE5
E
252 263Right-handed alpha
Helix 42
AE6
E
264 268Right-handed 310
Helix 43
AE7
E
277 281Right-handed 310
Helix 44
AE8
E
283 285Right-handed 310
Helix 45
AE9
E
320 329Right-handed alpha
Helix 46
AF1
E
337 342Right-handed alpha
Helix 47
AF2
E
352 364Right-handed alpha
Helix 48
AF3
E
368 373Right-handed alpha
Helix 49
AF4
E
374 376Right-handed 310
Helix 50
AF5
E
377 381Right-handed 310
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There are 9 sheets in PDB entry 8CBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
36 40parallel
Strand 3
A
12 16parallel
Strand 4
A
87 90parallel
Strand 5
A
148 153parallel
Strand 6
A
191 196parallel
Strand 7
A
250 251parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
107 108anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
36 41parallel
Strand 3
B
12 16parallel
Strand 4
B
87 90parallel
Strand 5
B
148 153parallel
Strand 6
B
191 196parallel
Strand 7
B
250 251parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
107 108anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 62first strand
Strand 2
C
36 41parallel
Strand 3
C
12 16parallel
Strand 4
C
87 90parallel
Strand 5
C
148 153parallel
Strand 6
C
191 196parallel
Strand 7
C
250 251parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 102first strand
Strand 2
C
107 108anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
36 40parallel
Strand 3
D
12 16parallel
Strand 4
D
87 90parallel
Strand 5
D
148 153parallel
Strand 6
D
191 196parallel
Strand 7
D
250 251parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 102first strand
Strand 2
D
107 108anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
272 274first strand
Strand 2
E
242 246parallel
Strand 3
E
204 208parallel
Strand 4
E
306 309parallel
Strand 5
E
287 290parallel
Strand 6
E
332 334parallel
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