Analysis of interatomic Contacts of Structural Units in PDB entry:
8CBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CBU entry

There are 4 chains in PDB entry 8CBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 222GLN 274
B
 SER 57ILE 208
C
 GLN 221GLY 272
D
 SER 57THR 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8CBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
93 106Right-handed alpha
Helix 2
AA2
B
123 134Right-handed alpha
Helix 3
AA3
B
150 166Right-handed alpha
Helix 4
AA4
B
167 169Right-handed 310
Helix 5
AA5
B
171 186Right-handed alpha
Helix 6
AA6
B
195 208Right-handed alpha
Helix 7
AA7
D
93 106Right-handed alpha
Helix 8
AA8
D
123 134Right-handed alpha
Helix 9
AA9
D
149 166Right-handed alpha
Helix 10
AB1
D
167 169Right-handed 310
Helix 11
AB2
D
171 186Right-handed alpha
Helix 12
AB3
D
195 210Right-handed alpha
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There are 4 sheets in PDB entry 8CBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 261first strand
Strand 2
A
248 253anti-parallel
Strand 3
A
236 244anti-parallel
Strand 4
A
223 227anti-parallel
Strand 5
A
265 269anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
112 114parallel
Strand 5
B
136 138parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 261first strand
Strand 2
C
248 253anti-parallel
Strand 3
C
236 244anti-parallel
Strand 4
C
224 227anti-parallel
Strand 5
C
265 268anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 89first strand
Strand 2
D
71 78anti-parallel
Strand 3
D
60 68anti-parallel
Strand 4
D
112 114parallel
Strand 5
D
136 138parallel
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