Analysis of interatomic Contacts of Structural Units in PDB entry:
8CC6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CC6 entry

There are 5 chains in PDB entry 8CC6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	HIS 460
B	THR 8	HIS 460
C	THR 8	HIS 460
D	THR 8	HIS 460
E	THR 8	HIS 460

There are 58 helices in PDB entry 8CC6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	21	Right-handed alpha
Helix 2	AA2	A	76	80	Right-handed 310
Helix 3	AA3	A	91	93	Right-handed 310
Helix 4	AA4	A	141	144	Right-handed 310
Helix 5	AA5	A	170	176	Right-handed alpha
Helix 6	AA6	A	220	222	Right-handed 310
Helix 7	AA7	A	223	243	Right-handed alpha
Helix 8	AA8	A	244	249	Right-handed 310
Helix 9	AA9	A	250	270	Right-handed alpha
Helix 10	AB1	A	282	309	Right-handed alpha
Helix 11	AB2	A	318	333	Right-handed alpha
Helix 12	AB3	A	398	460	Right-handed alpha
Helix 13	AB4	B	10	21	Right-handed alpha
Helix 14	AB5	B	76	81	Right-handed 310
Helix 15	AB6	B	91	93	Right-handed 310
Helix 16	AB7	B	141	144	Right-handed 310
Helix 17	AB8	B	170	176	Right-handed alpha
Helix 18	AB9	B	220	222	Right-handed 310
Helix 19	AC1	B	223	243	Right-handed alpha
Helix 20	AC2	B	244	249	Right-handed 310
Helix 21	AC3	B	250	270	Right-handed alpha
Helix 22	AC4	B	282	309	Right-handed alpha
Helix 23	AC5	B	318	333	Right-handed alpha
Helix 24	AC6	B	398	460	Right-handed alpha
Helix 25	AC7	C	10	21	Right-handed alpha
Helix 26	AC8	C	76	80	Right-handed 310
Helix 27	AC9	C	91	93	Right-handed 310
Helix 28	AD1	C	141	144	Right-handed 310
Helix 29	AD2	C	170	176	Right-handed alpha
Helix 30	AD3	C	220	243	Right-handed alpha
Helix 31	AD4	C	244	249	Right-handed 310
Helix 32	AD5	C	250	270	Right-handed alpha
Helix 33	AD6	C	282	309	Right-handed alpha
Helix 34	AD7	C	318	333	Right-handed alpha
Helix 35	AD8	C	398	460	Right-handed alpha
Helix 36	AD9	D	10	21	Right-handed alpha
Helix 37	AE1	D	76	81	Right-handed 310
Helix 38	AE2	D	91	93	Right-handed 310
Helix 39	AE3	D	141	144	Right-handed 310
Helix 40	AE4	D	170	176	Right-handed alpha
Helix 41	AE5	D	220	243	Right-handed alpha
Helix 42	AE6	D	244	249	Right-handed 310
Helix 43	AE7	D	250	270	Right-handed alpha
Helix 44	AE8	D	282	309	Right-handed alpha
Helix 45	AE9	D	318	333	Right-handed alpha
Helix 46	AF1	D	398	460	Right-handed alpha
Helix 47	AF2	E	10	21	Right-handed alpha
Helix 48	AF3	E	76	80	Right-handed 310
Helix 49	AF4	E	91	93	Right-handed 310
Helix 50	AF5	E	141	144	Right-handed 310
Helix 51	AF6	E	170	176	Right-handed alpha
Helix 52	AF7	E	220	222	Right-handed 310
Helix 53	AF8	E	223	243	Right-handed alpha
Helix 54	AF9	E	244	249	Right-handed 310
Helix 55	AG1	E	250	270	Right-handed alpha
Helix 56	AG2	E	282	309	Right-handed alpha
Helix 57	AG3	E	318	333	Right-handed alpha
Helix 58	AG4	E	398	460	Right-handed alpha

There are 15 sheets in PDB entry 8CC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	122	134	anti-parallel
Strand 4	A	103	105	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	122	134	anti-parallel
Strand 4	A	57	69	anti-parallel
Strand 5	A	37	52	anti-parallel
Strand 6	A	163	167	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	146	155	anti-parallel
Strand 3	A	206	218	anti-parallel
Strand 4	A	187	200	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	89	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	122	134	anti-parallel
Strand 4	B	103	105	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	89	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	122	134	anti-parallel
Strand 4	B	57	69	anti-parallel
Strand 5	B	37	52	anti-parallel
Strand 6	B	163	167	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	146	155	anti-parallel
Strand 3	B	206	218	anti-parallel
Strand 4	B	187	200	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	89	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	120	134	anti-parallel
Strand 4	C	103	106	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	89	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	120	134	anti-parallel
Strand 4	C	57	74	anti-parallel
Strand 5	C	37	52	anti-parallel
Strand 6	C	163	167	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	146	155	anti-parallel
Strand 3	C	206	218	anti-parallel
Strand 4	C	187	200	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	89	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	122	134	anti-parallel
Strand 4	D	103	105	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	89	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	122	134	anti-parallel
Strand 4	D	57	69	anti-parallel
Strand 5	D	37	52	anti-parallel
Strand 6	D	163	167	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	146	155	anti-parallel
Strand 3	D	206	218	anti-parallel
Strand 4	D	187	200	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	89	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	122	134	anti-parallel
Strand 4	E	103	105	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	89	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	122	134	anti-parallel
Strand 4	E	57	69	anti-parallel
Strand 5	E	37	52	anti-parallel
Strand 6	E	163	167	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	146	155	anti-parallel
Strand 3	E	206	218	anti-parallel
Strand 4	E	187	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CC6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CC6