Analysis of interatomic Contacts of Structural Units in PDB entry:
8CCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CCL entry

There is 1 chain in PDB entry 8CCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6GLN 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8CCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
43 48Right-handed 310
Helix 3
AA3
A
63 77Right-handed alpha
Helix 4
AA4
A
137 142Right-handed alpha
Helix 5
AA5
A
143 146Right-handed 310
Helix 6
AA6
A
156 167Right-handed alpha
Helix 7
AA7
A
185 195Right-handed alpha
Helix 8
AA8
A
246 250Right-handed 310
Helix 9
AA9
A
279 282Right-handed 310
Helix 10
AB1
A
288 309Right-handed alpha
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There are 6 sheets in PDB entry 8CCL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
34 36parallel
Strand 3
A
7 13parallel
Strand 4
A
103 112parallel
Strand 5
A
96 100anti-parallel
Strand 6
A
88 90anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
34 36parallel
Strand 3
A
7 13parallel
Strand 4
A
103 112parallel
Strand 5
A
275 277parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
61 62anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
242 244anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
235 238parallel
Strand 3
A
149 153parallel
Strand 4
A
172 176parallel
Strand 5
A
198 201parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 211first strand
Strand 2
A
215 222anti-parallel
Strand 3
A
228 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il