Analysis of interatomic Contacts of Structural Units in PDB entry:
8CCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CCY entry

There is 1 chain in PDB entry 8CCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 81ARG 882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8CCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 107Right-handed alpha
Helix 2
AA2
A
141 146Right-handed alpha
Helix 3
AA3
A
148 163Right-handed alpha
Helix 4
AA4
A
287 303Right-handed alpha
Helix 5
AA5
A
331 349Right-handed alpha
Helix 6
AA6
A
367 380Right-handed alpha
Helix 7
AA7
A
395 399Right-handed 310
Helix 8
AA8
A
401 419Right-handed alpha
Helix 9
AA9
A
440 451Right-handed alpha
Helix 10
AB1
A
466 470Right-handed 310
Helix 11
AB2
A
501 510Right-handed alpha
Helix 12
AB3
A
512 521Right-handed alpha
Helix 13
AB4
A
529 534Right-handed 310
Helix 14
AB5
A
537 554Right-handed alpha
Helix 15
AB6
A
562 574Right-handed alpha
Helix 16
AB7
A
575 578Right-handed 310
Helix 17
AB8
A
584 587Right-handed 310
Helix 18
AB9
A
588 594Right-handed alpha
Helix 19
AC1
A
616 625Right-handed alpha
Helix 20
AC2
A
648 653Right-handed 310
Helix 21
AC3
A
654 659Right-handed alpha
Helix 22
AC4
A
660 662Right-handed 310
Helix 23
AC5
A
678 681Right-handed 310
Helix 24
AC6
A
685 694Right-handed alpha
Helix 25
AC7
A
705 720Right-handed alpha
Helix 26
AC8
A
722 728Right-handed alpha
Helix 27
AC9
A
729 735Right-handed alpha
Helix 28
AD1
A
741 753Right-handed alpha
Helix 29
AD2
A
756 768Right-handed alpha
Helix 30
AD3
A
769 771Right-handed 310
Helix 31
AD4
A
778 784Right-handed alpha
Helix 32
AD5
A
784 797Right-handed alpha
Helix 33
AD6
A
803 807Right-handed alpha
Helix 34
AD7
A
841 852Right-handed alpha
Helix 35
AD8
A
852 867Right-handed alpha
Helix 36
AD9
A
871 882Right-handed alpha
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There are 7 sheets in PDB entry 8CCY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
84 89parallel
Strand 3
A
133 138parallel
Strand 4
A
165 169parallel
Strand 5
A
278 281parallel
Strand 6
A
266 269anti-parallel
Strand 7
A
235 240anti-parallel
Strand 8
A
199 200anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
130 131anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
227 228anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
355 357parallel
Strand 3
A
311 318parallel
Strand 4
A
523 528parallel
Strand 5
A
478 485parallel
Strand 6
A
473 475anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
455 458parallel
Strand 3
A
478 485parallel
Strand 4
A
523 528parallel
Strand 5
A
311 318parallel
Strand 6
A
557 559parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 632first strand
Strand 2
A
672 676parallel
Strand 3
A
607 611parallel
Strand 4
A
698 703parallel
Strand 5
A
773 777parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
808 810first strand
Strand 2
A
817 819anti-parallel
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