Analysis of interatomic Contacts of Structural Units in PDB entry:
8CD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CD0 entry

There are 2 chains in PDB entry 8CD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 83ASN 880
C
 GLN 1VAL 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8CD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 107Right-handed alpha
Helix 2
AA2
A
141 146Right-handed alpha
Helix 3
AA3
A
148 163Right-handed alpha
Helix 4
AA4
A
287 302Right-handed alpha
Helix 5
AA5
A
331 349Right-handed alpha
Helix 6
AA6
A
367 374Right-handed alpha
Helix 7
AA7
A
375 379Right-handed 310
Helix 8
AA8
A
401 420Right-handed alpha
Helix 9
AA9
A
440 451Right-handed alpha
Helix 10
AB1
A
466 470Right-handed 310
Helix 11
AB2
A
501 510Right-handed alpha
Helix 12
AB3
A
512 521Right-handed alpha
Helix 13
AB4
A
529 533Right-handed 310
Helix 14
AB5
A
537 554Right-handed alpha
Helix 15
AB6
A
562 574Right-handed alpha
Helix 16
AB7
A
575 579Right-handed 310
Helix 17
AB8
A
588 595Right-handed alpha
Helix 18
AB9
A
616 626Right-handed alpha
Helix 19
AC1
A
636 640Right-handed 310
Helix 20
AC2
A
648 653Right-handed 310
Helix 21
AC3
A
654 659Right-handed alpha
Helix 22
AC4
A
678 681Right-handed 310
Helix 23
AC5
A
685 694Right-handed alpha
Helix 24
AC6
A
705 720Right-handed alpha
Helix 25
AC7
A
722 728Right-handed alpha
Helix 26
AC8
A
729 734Right-handed alpha
Helix 27
AC9
A
742 753Right-handed alpha
Helix 28
AD1
A
756 768Right-handed alpha
Helix 29
AD2
A
779 784Right-handed alpha
Helix 30
AD3
A
784 796Right-handed alpha
Helix 31
AD4
A
803 808Right-handed alpha
Helix 32
AD5
A
841 852Right-handed alpha
Helix 33
AD6
A
853 866Right-handed alpha
Helix 34
AD7
A
871 880Right-handed alpha
Helix 35
AD8
C
86 90Right-handed 310
Helix 36
AD9
C
110 114Right-handed 310
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There are 8 sheets in PDB entry 8CD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
85 88parallel
Strand 3
A
135 138parallel
Strand 4
A
165 167parallel
Strand 5
A
278 280parallel
Strand 6
A
267 269anti-parallel
Strand 7
A
235 236anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
239 240anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 388first strand
Strand 2
A
355 358parallel
Strand 3
A
311 321parallel
Strand 4
A
523 528parallel
Strand 5
A
478 484parallel
Strand 6
A
473 475anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 458first strand
Strand 2
A
478 484parallel
Strand 3
A
523 528parallel
Strand 4
A
311 321parallel
Strand 5
A
557 559parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 632first strand
Strand 2
A
672 677parallel
Strand 3
A
607 610parallel
Strand 4
A
698 702parallel
Strand 5
A
773 776parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 811first strand
Strand 2
A
816 818anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
68 72anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
35 38anti-parallel
Strand 4
C
91 96anti-parallel
Strand 5
C
121 123anti-parallel
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