Analysis of interatomic Contacts of Structural Units in PDB entry:
8CD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CD3 entry

There are 2 chains in PDB entry 8CD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 715MET 816
A
 ASP 50LEU 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 8CD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
767 772Right-handed alpha
Helix 2
AA2
B
792 802Right-handed alpha
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There are 2 sheets in PDB entry 8CD3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
724 732first strand
Strand 2
B
806 814anti-parallel
Strand 3
B
779 783anti-parallel
Strand 4
B
786 787anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
724 732first strand
Strand 2
B
806 814anti-parallel
Strand 3
B
779 783anti-parallel
Strand 4
B
758 763anti-parallel
Strand 5
B
740 744anti-parallel
Strand 6
A
54 57anti-parallel
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