Analysis of interatomic Contacts of Structural Units in PDB entry:
8CD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CD8 entry

There are 4 chains in PDB entry 8CD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 61ALA 322
B
 GLY 401SER 403
C
 ARG 61ALA 322
D
 GLY 401SER 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8CD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 81Right-handed 310
Helix 2
AA2
A
83 98Right-handed alpha
Helix 3
AA3
A
102 108Right-handed 310
Helix 4
AA4
A
109 116Right-handed 310
Helix 5
AA5
A
152 160Right-handed 310
Helix 6
AA6
A
197 201Right-handed 310
Helix 7
AA7
A
208 210Right-handed 310
Helix 8
AA8
A
223 234Right-handed alpha
Helix 9
AA9
A
294 298Right-handed 310
Helix 10
AB1
A
302 315Right-handed alpha
Helix 11
AB2
A
317 321Right-handed 310
Helix 12
AB3
C
77 81Right-handed 310
Helix 13
AB4
C
83 98Right-handed alpha
Helix 14
AB5
C
102 108Right-handed 310
Helix 15
AB6
C
109 116Right-handed 310
Helix 16
AB7
C
152 160Right-handed 310
Helix 17
AB8
C
197 201Right-handed 310
Helix 18
AB9
C
208 210Right-handed 310
Helix 19
AC1
C
223 234Right-handed alpha
Helix 20
AC2
C
294 298Right-handed 310
Helix 21
AC3
C
302 315Right-handed alpha
Helix 22
AC4
C
317 321Right-handed 310
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There are 6 sheets in PDB entry 8CD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
65 75parallel
Strand 3
A
138 142parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
65 75parallel
Strand 3
A
171 176parallel
Strand 4
A
203 206parallel
Strand 5
A
189 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
179 180parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 125first strand
Strand 2
C
65 75parallel
Strand 3
C
138 142parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 125first strand
Strand 2
C
65 75parallel
Strand 3
C
171 176parallel
Strand 4
C
203 206parallel
Strand 5
C
189 191anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 149first strand
Strand 2
C
179 180parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il