Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CDB entry

There are 5 chains in PDB entry 8CDB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 18	ARG 323
B	PRO 18	ARG 323
C	PRO 18	ARG 323
D	PRO 18	ARG 323
E	PRO 18	LYS 66

There are168 helices in PDB entry 8CDB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	34	Right-handed alpha
Helix 2	AA2	A	36	55	Right-handed alpha
Helix 3	AA3	A	83	98	Right-handed alpha
Helix 4	AA4	A	102	108	Right-handed 310
Helix 5	AA5	A	109	116	Right-handed 310
Helix 6	AA6	A	156	160	Right-handed 310
Helix 7	AA7	A	197	200	Right-handed 310
Helix 8	AA8	A	208	210	Right-handed 310
Helix 9	AA9	A	223	232	Right-handed alpha
Helix 10	AB1	A	248	252	Right-handed 310
Helix 11	AB2	A	302	315	Right-handed alpha
Helix 12	AB3	A	317	322	Right-handed alpha
Helix 13	AB4	B	24	34	Right-handed alpha
Helix 14	AB5	B	36	55	Right-handed alpha
Helix 15	AB6	B	83	98	Right-handed alpha
Helix 16	AB7	B	102	108	Right-handed 310
Helix 17	AB8	B	109	116	Right-handed 310
Helix 18	AB9	B	156	160	Right-handed 310
Helix 19	AC1	B	197	200	Right-handed 310
Helix 20	AC2	B	208	210	Right-handed 310
Helix 21	AC3	B	223	232	Right-handed alpha
Helix 22	AC4	B	248	252	Right-handed 310
Helix 23	AC5	B	302	315	Right-handed alpha
Helix 24	AC6	B	317	322	Right-handed alpha
Helix 25	AC7	C	24	34	Right-handed alpha
Helix 26	AC8	C	36	55	Right-handed alpha
Helix 27	AC9	C	83	98	Right-handed alpha
Helix 28	AD1	C	102	108	Right-handed 310
Helix 29	AD2	C	109	113	Right-handed 310
Helix 30	AD3	C	156	160	Right-handed 310
Helix 31	AD4	C	197	200	Right-handed 310
Helix 32	AD5	C	208	210	Right-handed 310
Helix 33	AD6	C	223	232	Right-handed alpha
Helix 34	AD7	C	248	252	Right-handed 310
Helix 35	AD8	C	302	315	Right-handed alpha
Helix 36	AD9	C	317	322	Right-handed alpha
Helix 37	AE1	D	24	34	Right-handed alpha
Helix 38	AE2	D	36	55	Right-handed alpha
Helix 39	AE3	D	83	98	Right-handed alpha
Helix 40	AE4	D	102	108	Right-handed 310
Helix 41	AE5	D	109	116	Right-handed 310
Helix 42	AE6	D	156	160	Right-handed 310
Helix 43	AE7	D	197	200	Right-handed 310
Helix 44	AE8	D	208	210	Right-handed 310
Helix 45	AE9	D	223	232	Right-handed alpha
Helix 46	AF1	D	248	252	Right-handed 310
Helix 47	AF2	D	302	315	Right-handed alpha
Helix 48	AF3	D	317	322	Right-handed alpha
Helix 49	AF4	E	24	34	Right-handed alpha
Helix 50	AF5	E	36	55	Right-handed alpha
Helix 51	AF6	E	83	98	Right-handed alpha
Helix 52	AF7	E	102	108	Right-handed 310
Helix 53	AF8	E	109	113	Right-handed 310
Helix 54	AF9	E	156	160	Right-handed 310
Helix 55	AG1	E	197	200	Right-handed 310
Helix 56	AG2	E	208	210	Right-handed 310
Helix 57	AG3	E	223	232	Right-handed alpha
Helix 58	AG4	E	248	252	Right-handed 310
Helix 59	AG5	E	302	315	Right-handed alpha
Helix 60	AG6	E	317	322	Right-handed alpha
Helix 61	AG7	F	24	34	Right-handed alpha
Helix 62	AG8	F	36	55	Right-handed alpha
Helix 63	AG9	F	83	98	Right-handed alpha
Helix 64	AH1	F	102	108	Right-handed 310
Helix 65	AH2	F	109	116	Right-handed 310
Helix 66	AH3	F	156	160	Right-handed 310
Helix 67	AH4	F	197	200	Right-handed 310
Helix 68	AH5	F	208	210	Right-handed 310
Helix 69	AH6	F	223	232	Right-handed alpha
Helix 70	AH7	F	248	252	Right-handed 310
Helix 71	AH8	F	302	315	Right-handed alpha
Helix 72	AH9	F	317	322	Right-handed alpha
Helix 73	AI1	G	24	34	Right-handed alpha
Helix 74	AI2	G	36	55	Right-handed alpha
Helix 75	AI3	G	83	98	Right-handed alpha
Helix 76	AI4	G	102	108	Right-handed 310
Helix 77	AI5	G	109	116	Right-handed 310
Helix 78	AI6	G	156	160	Right-handed 310
Helix 79	AI7	G	197	200	Right-handed 310
Helix 80	AI8	G	208	210	Right-handed 310
Helix 81	AI9	G	223	232	Right-handed alpha
Helix 82	AJ1	G	248	252	Right-handed 310
Helix 83	AJ2	G	302	315	Right-handed alpha
Helix 84	AJ3	G	317	322	Right-handed alpha
Helix 85	AJ4	H	24	34	Right-handed alpha
Helix 86	AJ5	H	36	55	Right-handed alpha
Helix 87	AJ6	H	83	98	Right-handed alpha
Helix 88	AJ7	H	102	108	Right-handed 310
Helix 89	AJ8	H	109	116	Right-handed 310
Helix 90	AJ9	H	156	160	Right-handed 310
Helix 91	AK1	H	197	200	Right-handed 310
Helix 92	AK2	H	208	210	Right-handed 310
Helix 93	AK3	H	223	232	Right-handed alpha
Helix 94	AK4	H	248	252	Right-handed 310
Helix 95	AK5	H	302	315	Right-handed alpha
Helix 96	AK6	H	317	322	Right-handed alpha
Helix 97	AK7	I	24	34	Right-handed alpha
Helix 98	AK8	I	36	55	Right-handed alpha
Helix 99	AK9	I	83	98	Right-handed alpha
Helix 100	AL1	I	102	108	Right-handed 310
Helix 101	AL2	I	109	116	Right-handed 310
Helix 102	AL3	I	156	160	Right-handed 310
Helix 103	AL4	I	197	200	Right-handed 310
Helix 104	AL5	I	208	210	Right-handed 310
Helix 105	AL6	I	223	232	Right-handed alpha
Helix 106	AL7	I	248	252	Right-handed 310
Helix 107	AL8	I	302	315	Right-handed alpha
Helix 108	AL9	I	317	322	Right-handed alpha
Helix 109	AM1	J	24	34	Right-handed alpha
Helix 110	AM2	J	36	55	Right-handed alpha
Helix 111	AM3	J	83	98	Right-handed alpha
Helix 112	AM4	J	102	108	Right-handed 310
Helix 113	AM5	J	109	113	Right-handed 310
Helix 114	AM6	J	156	160	Right-handed 310
Helix 115	AM7	J	197	200	Right-handed 310
Helix 116	AM8	J	208	210	Right-handed 310
Helix 117	AM9	J	223	232	Right-handed alpha
Helix 118	AN1	J	248	252	Right-handed 310
Helix 119	AN2	J	302	315	Right-handed alpha
Helix 120	AN3	J	317	322	Right-handed alpha
Helix 121	AN4	K	24	34	Right-handed alpha
Helix 122	AN5	K	36	55	Right-handed alpha
Helix 123	AN6	K	83	98	Right-handed alpha
Helix 124	AN7	K	102	108	Right-handed 310
Helix 125	AN8	K	109	116	Right-handed 310
Helix 126	AN9	K	156	160	Right-handed 310
Helix 127	AO1	K	197	200	Right-handed 310
Helix 128	AO2	K	208	210	Right-handed 310
Helix 129	AO3	K	223	232	Right-handed alpha
Helix 130	AO4	K	248	252	Right-handed 310
Helix 131	AO5	K	302	315	Right-handed alpha
Helix 132	AO6	K	317	322	Right-handed alpha
Helix 133	AO7	L	24	34	Right-handed alpha
Helix 134	AO8	L	36	55	Right-handed alpha
Helix 135	AO9	L	83	98	Right-handed alpha
Helix 136	AP1	L	102	108	Right-handed 310
Helix 137	AP2	L	109	116	Right-handed 310
Helix 138	AP3	L	156	160	Right-handed 310
Helix 139	AP4	L	197	200	Right-handed 310
Helix 140	AP5	L	208	210	Right-handed 310
Helix 141	AP6	L	223	232	Right-handed alpha
Helix 142	AP7	L	248	252	Right-handed 310
Helix 143	AP8	L	302	315	Right-handed alpha
Helix 144	AP9	L	317	322	Right-handed alpha
Helix 145	AQ1	M	24	34	Right-handed alpha
Helix 146	AQ2	M	36	55	Right-handed alpha
Helix 147	AQ3	M	83	98	Right-handed alpha
Helix 148	AQ4	M	102	108	Right-handed 310
Helix 149	AQ5	M	109	116	Right-handed 310
Helix 150	AQ6	M	156	160	Right-handed 310
Helix 151	AQ7	M	197	200	Right-handed 310
Helix 152	AQ8	M	208	210	Right-handed 310
Helix 153	AQ9	M	223	232	Right-handed alpha
Helix 154	AR1	M	248	252	Right-handed 310
Helix 155	AR2	M	302	315	Right-handed alpha
Helix 156	AR3	M	317	322	Right-handed alpha
Helix 157	AR4	N	24	34	Right-handed alpha
Helix 158	AR5	N	36	55	Right-handed alpha
Helix 159	AR6	N	83	98	Right-handed alpha
Helix 160	AR7	N	102	108	Right-handed 310
Helix 161	AR8	N	109	116	Right-handed 310
Helix 162	AR9	N	156	160	Right-handed 310
Helix 163	AS1	N	197	200	Right-handed 310
Helix 164	AS2	N	208	210	Right-handed 310
Helix 165	AS3	N	223	232	Right-handed alpha
Helix 166	AS4	N	248	252	Right-handed 310
Helix 167	AS5	N	302	315	Right-handed alpha
Helix 168	AS6	N	317	322	Right-handed alpha

There are 28 sheets in PDB entry 8CDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	65	75	parallel
Strand 3	A	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	65	75	parallel
Strand 3	A	171	176	parallel
Strand 4	A	202	206	parallel
Strand 5	A	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	65	75	parallel
Strand 3	B	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	65	75	parallel
Strand 3	B	171	176	parallel
Strand 4	B	202	206	parallel
Strand 5	B	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	125	first strand
Strand 2	C	65	75	parallel
Strand 3	C	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	125	first strand
Strand 2	C	65	75	parallel
Strand 3	C	171	176	parallel
Strand 4	C	202	206	parallel
Strand 5	C	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	125	first strand
Strand 2	D	65	75	parallel
Strand 3	D	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	125	first strand
Strand 2	D	65	75	parallel
Strand 3	D	171	176	parallel
Strand 4	D	202	206	parallel
Strand 5	D	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	125	first strand
Strand 2	E	65	75	parallel
Strand 3	E	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	125	first strand
Strand 2	E	65	75	parallel
Strand 3	E	171	176	parallel
Strand 4	E	202	206	parallel
Strand 5	E	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	125	first strand
Strand 2	F	65	75	parallel
Strand 3	F	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	125	first strand
Strand 2	F	65	75	parallel
Strand 3	F	171	176	parallel
Strand 4	F	202	206	parallel
Strand 5	F	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	125	first strand
Strand 2	G	65	75	parallel
Strand 3	G	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	125	first strand
Strand 2	G	65	75	parallel
Strand 3	G	171	176	parallel
Strand 4	G	202	206	parallel
Strand 5	G	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	65	75	parallel
Strand 3	H	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	65	75	parallel
Strand 3	H	171	176	parallel
Strand 4	H	202	206	parallel
Strand 5	H	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	125	first strand
Strand 2	I	65	75	parallel
Strand 3	I	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	125	first strand
Strand 2	I	65	75	parallel
Strand 3	I	171	176	parallel
Strand 4	I	202	206	parallel
Strand 5	I	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	121	125	first strand
Strand 2	J	65	75	parallel
Strand 3	J	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	121	125	first strand
Strand 2	J	65	75	parallel
Strand 3	J	171	176	parallel
Strand 4	J	202	206	parallel
Strand 5	J	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	125	first strand
Strand 2	K	65	75	parallel
Strand 3	K	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	125	first strand
Strand 2	K	65	75	parallel
Strand 3	K	171	176	parallel
Strand 4	K	202	206	parallel
Strand 5	K	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	125	first strand
Strand 2	L	65	75	parallel
Strand 3	L	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	125	first strand
Strand 2	L	65	75	parallel
Strand 3	L	171	176	parallel
Strand 4	L	202	206	parallel
Strand 5	L	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	121	125	first strand
Strand 2	M	65	75	parallel
Strand 3	M	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	121	125	first strand
Strand 2	M	65	75	parallel
Strand 3	M	171	176	parallel
Strand 4	M	202	206	parallel
Strand 5	M	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	121	125	first strand
Strand 2	N	65	75	parallel
Strand 3	N	138	142	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	121	125	first strand
Strand 2	N	65	75	parallel
Strand 3	N	171	176	parallel
Strand 4	N	202	206	parallel
Strand 5	N	189	191	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CDB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDB